Detail



ID : Ahg488330

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488330|fgenesh2_kg.6__1464__AT5G14870.1
Sequence
ATGAATAAAA TCCGGTCTCT CCGCTGCCTC CTCCCGGAGA CCATAACCTC CGCCGCCTCT AATCGAGGAT CTGACGGTAG CCAAGTCAGC GTCCTCCTAT GGCGGCATCA GATCCTCGAC CCGGACAGCA ACATCGTCAC CTATTGGAAC CACGTCTTTC TCATTACCTC AATCCTCGCT CTCTTTCTCG ATCCTCTCTA CTTCTACGTC CCTTACGTCG GAGGTCCGGC GTGTCTCTCC ATCGACATCA GCCTCGCCGC TACAGTAACT TTCTTCCGTA CAGTCGCCGA TATCTTCCAC CTCTTGCACA TCCTCATGAA ATTCAGAACC GCCTTCGTCG CGAGAAGCTC TCGAGTTTTT GGTCGCGGTG AGCTTGTTAT GGATTCTAGA GAGATTGCTA TGAGATACTT GAAGACAGAT TTCCTCATTG ATGTCGCCGC CATGCTTCCT CTTCCTCAGC TTGTTATTTG GCTAGTAATT CCAGCCGCTA CAAACGGGAC TGCTAATCAT GCCAATAGCA CTCTCGCACT TATCGTTCTT GTTCAATACA TTCCAAGATC ATTCATCATA TTCCCTCTCA ACCAAAGGAT TATCAAAACA ACCGGGTTTA TCGCCAAGAC TGCTTGGGCT GGAGCTGCAT ACAACCTCCT CCTCTACATC CTTGCTAGTC ACGTTTTAGG AGCAATGTGG TATTTGTCAT CAATCGGGCG GCAGTTTTCG TGCTGGTCTA ATGTATGTAA GAAAGATAAC GCCCTGAGAG TTTTGGATTG TCTTCCTAGC TTCTTGGACT GCAAGAGTTT GCAGCAACCT GAGCGCCAGT ATTGGCAGAA CGTTACTCAG GTCCTTTCTC ATTGTGATGC TACAAGCAGC ACTACCAATT TCAAGTTCGG AATGTTTGCT GAAGCCTTTA CCACTCAAGT TGCTACAACA GATTTTGTGT CCAAATACTT GTATTGTCTT TGGTGGGGTT TAAGAAATTT AAGTTCTTAT GGCCAGAATA TAACCACAAG TGTGTACCTT GGCGAGACCT TGTTCTGTAT AACAATTTGT ATTTTTGGGT TGATTCTCTT TACACTCCTG ATTGGTAACA TGCAATCTTC TCTACAATCG ATGTCAGTAA GAGTTGAGGA ATGGAGAGTT AAGCGAAGAG ATACTGAAGA ATGGATGAGA CATCGTCAAC TACCTCCAGA GCTTCAAGAA CGTGTCCGAA GATTCGTTCA ATATAAATGG CTTGCAACAC GAGGTGTCGA TGAAGAATCA ATCCTCCATT CATTACCTAC AGATTTACGC CGCGAAATCC AACGTCATCT TTGTCTCGCC CTTGTCCGCC GGGTCCCATT CTTCTCTCAA ATGGATGATC AACTTCTTGA TGCTATATGT GGATGCCTTG TCTCATCTTT AAGCACAGCT GGGACCTACA TATTTCGTGA AGGTGATCCG GTGAATGAGA TGCTATTTGT GATCCGAGGA CAAATAGAGA GCTCAACAAC AAATGGAGGA AGATCTGGTT TCTTTAACTC CACTACTCTA CGACCTGGCG ATTTCTGTGG GGAAGAACTT CTTACATGGG CCTTAATGCC AAACTCTACC CTCAATCTTC CGTCTTCAAC CCGAAGCGTC CGTGCACTCT CTGAAGTCGA AGCCTTTGCC CTAAGCGCAG AGGATCTTAA GTTCGTTGCT CATCAGTTCA AGCGTCTTCA AAGCAAAAAG CTACAACACG CTTTCAGGTA CTACTCACAT CAGTGGCGAG CATGGGGGGC ATGTTTTGTC CAATCCGCAT GGAGAAGATA CAAGCGAAGA AAGCTCGCGA AAGAACTCAG CCTTCATGAA AGTAGCGGAT ACTATTACAC GGATGAAACA GGTTACAATG AAGAAGACGA AGAAACTAGA GAGTATTACT ATGGAAGCGA CGAGGAGGAT ATGGAAGGCG GATCAATGGA CAACACAAAC AACAATCAAA ATCTTGGAGC AACGATCTTA GCATCTAAAT TCGCGGCAAA CACGAGAAGA GGCACAAATC AAAAGGCTTC AAGTAGTAGT ACTGGTAAAA AAGATGGATC TTCAAGCAGT TTGAAGATGC CTCAACTATT CAAACCAGAT GAGCCTGATT TCTCTATAGA TAAAGAAGAC GTTTAAAGTG TAGACATTAT GAGCAAAAAA CTTGTGTGAA CTGTTTCGTT TTAGATGGTA CATAGATAGG AAATCCCATA AATTATTTGA ACTTCTAATT TTTTTCTTTT CTTTTTTTTT TGTTTCGGTT TGGGAATGTT ATTAGATATA GAAAACGAGT GTAGAGTAAT AATACATTGT TATTAAACTG T 
Length2321
Protein Sequence
Protein Residue
Map Locationscaffold_6: 5790553.. 5793309
Download Sequence
A.thaliana
AGI-codeAT5G14870.1
Descriptioncyclic nucleotide-gated channel 18
TAIR curator summaryEncodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.
Alias[ATCNGC18][CNGC18][CYCLIC NUCLEOTIDE-GATED CHANNEL 18][cyclic nucleotide-gated channel 18]
Gene coexpression
MR
MR Locus Description
10.247 Ahg906766
24.7386 Ahg335836 EF hand calcium-binding protein family
34.0294 Ahg896507
37.51 Ahg477013 Terpenoid cyclases family protein
39.3446 Ahg924251
41.9524 Ahg478320 GDSL-like Lipase/Acylhydrolase superfamily protein
44.1135 Ahg913614 gibberellin 20-oxidase 5
52.2015 Ahg936672 Protein of unknown function (DUF1216)
57.8273 Ahg897564 HXXXD-type acyl-transferase family protein
61.3351 Ahg927040
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression