Detail



ID : Ahg489185

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|489185|fgenesh2_kg.6__2319__AT5G23260.2
Sequence
GTCATCCAAC CTCAAACTCC ATTTCCAGAT CCCCAAGAAC ACAGCTCAAC AAAAAGGAGG AAGAGGGAGC AACTAACAAG AGGAAGAAGA GAGAGATGGG GAGAGGGAAG ATTGAGATAA AGAAGATAGA GAATCAGACG GCGAGGCAAG TGACCTTCTC CAAGAGAAGA ACTGGTCTTA TGAAGAAGAC TCGTGAGCTC TCTATTCTCT GTGACGCTCA CATCGGTCTC ATCGTCTTCT CTGCCACCGG AAAGCTCTCA GAGTTCTGCT CCGAACAGGA CAGGATGCCT CAACTCATTG ACCGATACTT GCATACCAAC GGACTGCGAC TTCCTGATCA TCAGGACGAC CAGGATCAAT TGTACCATGA GATGGAAGTA TTAAGAAGAG AGACATGTAA CCTTGAGCTT CATCTGCGTC CCTATCAAGG ACATGACTTA GCCTCCATTC CTCCTCATGA GCTTGACGGA CTCGAGCGAC AGCTCGAACA TTCTGTCCTC AAAGTCCGTG AGCGTAAGAA TGAGTTAATG CAGCAACAGT TGGAGAATCT AAGCAGAAAG AGGCGGATGC TAGAAGAAGA TAACAACAAC ATGTACCGTT GGCTTCATGA GCATCGTGCA GCGATTGAGT TTCAGCAAGC TGGGATAGAG ACGAAACCAG GGGAGTATCA ACAGTTTCTA GAGCAGCTTC AGTACTATAA ACCAGGGGAG TATGATCAAC AGTTTCTAGA GCAGCAGCAA CAACAACAAC CAAACAGTGT TCTTCAGCTT GCTACACTTC CTTCCGAGAT TGATCCTAAT TACAATCTCC AGCTTGCTCA GCCTAATCTT CAAAACGATC CAACGGCCAA GAGCGATTAA TATAATCCTC AATAGATATC TACTCGTTCT TTCCGGAGAC AGATTAATGA ACTTTTACTA CCTATATTTT TATTAGCCAA TGTCTTCTTT TGTGTGGCCA TGGAATTGGT TATATAATTA ATCATCATTA TTAC 
Length994
Protein Sequence
Protein Residue
Map Locationscaffold_6: 9426391.. 9428853
Download Sequence
A.thaliana
AGI-codeAT5G23260.2
DescriptionK-box region and MADS-box transcription factor family protein
TAIR curator summaryEncodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. Paralogous to GOA.
Alias[ABS][AGL32][TT16][ARABIDOPSIS BSISTER][AGAMOUS-like 32][TRANSPARENT TESTA16]
Gene coexpression
MR
MR Locus Description
16.1245 Ahg935992
18.7083 Ahg352151 F-box family protein
31.289 Ahg477013 Terpenoid cyclases family protein
40.4351 Ahg896918
53.3104 Ahg923767 Ubiquitin carboxyl-terminal hydrolase-related protein
56.2583 Ahg493352 HXXXD-type acyl-transferase family protein
63.3404 Ahg894664
69.4982 Ahg951695 Protein of unknown function (DUF626)
78.7655 Ahg323966
85.7496 Ahg899060 Cytochrome P450 superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression