| Annotation |
|---|
| Description | jgi|Araly1|489208|fgenesh2_kg.6__2342__AT5G23450.2 |
| Sequence |
GAAATAAATC CGAAAGGAGG GGGCCATAGG TTTCTGCTGT CGAGTCGAAT CCAATCGAAA ATCGAATCGA ATTGAGTCGA GTCATCATCT CCTCCGCCAT TATCGTCTTC TCTCTCTCTC TCTCCGCCAC CTCTCTTCAA TTCTGACGCT TCTCAGATCC TCCGATCCGG CGGCGTTACT TTTGCTTTTT TGTTCGCCGA GAAGCTAAGG GAAAATTTTC TGAAAAACGC GTTGACGGAT CTGATATATA GCTACGGATT AGAAATGGCT TCGCTGCGTA ATTCTCTCTG AAATCTGTTC GTTGACCAGC TCGAACAAGG TTGGGTTTTT GTTTTGTGTA TGCCTCCCGA TCACTGTTTG TCGTCTGTTT CGTCCGCGGA ACTCAAGAGC AGAGAGATTA TTAGCTTACG GATATGCAGA AGAGTGGCGT AAATCGGAAT CCTTCTTTAA GAGTAGCCAT TCCTCAGGCA CAACAGTCGC TTAGGCGTTT AGGTTTTTGC TCTCAAATAG CTACGGGCGG ATCTCAGCAG TCATCTCCTG TGGTATTCCC TGAAAAGAGA AGCAAGAAGG TGAAGGCATC TTCGAGACGT GGTGAGGTTA CTAATGATCC ACAGGTGAAA CCGAAGCCTG ATGAGCATCG GATTGATATT GGTGGAGGAG ATGAGAAATC AGATTTGTTA GGTAGTCTTG TTTACGCCGG GAAGCTTGTA TTGGATAAGA GGAAATCTGC GAGTGGGAAA GATGCTACAG AGATACAGCA ACCATCTGCC ACAGACGTCT CTAATAAGAA AGCAGTTGAT GCAAAGCTTA CAAGCAGCGC TTTGGTTTGG GGTTCTGACA TGCTACAGCT TAACGATGTT GTCTCGGTGA CATACAATGT TGGTCTTAGG CATTTCACTG TGCATGCTTA TCCAGTTGGA AAGGTTTCTT GTGGCCTGTC TTGCTTCACG AAACCAAAGA GAAGCCGCAA GGATTTCCGC TTTGTCGCAC CTACAGTTGA AGAAGCAGTT CAATGGGTGG CCAGTTTTGG AGACCAACAA TGTTTTATCA ACTGTTTACC ACATCCTTTA GTCTCAAAGA AACAGGCTTC ATCTGAGTTA TTTTCGGTCC CCGTCGATAC TCCTCCCGAG TTGGTCTTCA GGTGTAAGAG TGCACCCAAA ATGCTTGTCA TATTGAACCC TAGGTCAGGG CATGGACGAT CTATCAAAGT GTTCCACAAT GTAGTGGAGC CAATTTTCAA GCTGGCCGGG GTTAAGATGG AGGTTGTCAA AACAACTAAA GCAGGTCACG CGAGAGAGTT GGCTTCCACT GTCGACATTA ACTTGTGCTC AGACGGTATA ATTTGTGTTG GAGGTGATGG AATCATCAAT GAGGTTCTTA ATGGTCTACT TACTCGAAGC AATCAGAAAG AAGGAGTTTC TATCCCAATT GGAATAGTAC CTGCTGGTTC TGATAACTCG TTAGTTTGGA CTGTCCTTGG TGTACGAGAT CCTATTTCTG CAGCACTATC TATTGTGAAG GGTGGCCTAA CAGCTACTGA TGTCTTTGCT GTTGAATGGA TTCATACCGG TGTTATACAC TTTGGAATGA CTGTATCCTA CTATGGTTTT GTTAGCGATG TTTTGGAGCT CTCTGAAAAA TACCAAAAAC GGTTTGGTCC TTTGCGTTAC TTTGTTGCTG GATTCCTCAA GTTCATGTGT TTGCCAAAGT ATAGCTATGA AGTGGAATAT CTTCCGGCAC AAAAAGAGGA TGCGGAAGGC AAAATTCGAC TTGAAAAGGA AGCGATGGAT ATGCAAGATC TCTACACGGA TGTAATGAGG AGATCAAGCA GAGAAGGATT TCCTAGAGCC TCTAGTTTAT CAAGTATTGA CTCCATAATG ACCCCAAGCG TAGGCGAAGT AGACACGTGT AGCAGCACAC ATGCCAGCAC TGAGCCGTCT GAATATGTCC GTGGAATAGA TCCTAAAATG AAACGCATGT CCTCTGGAAG AAGAGATGTT ACGGCTGAGC CAGAGGTTAT TCATCCTCAA GCACAGTCAA CAACCCCTAA TTGGCCAAGG ACAAGGTCAA AGTCAAGAAT GGATAAAGGA TGGATGGGGT TAACATCTGT GCAGGATCCT CCAACTCGAT GTTCATGGGG AAATACCGGT GGTCATGACA GGGAAGATAT ATCATCTACT GTATCTGATC CAGGTCCGAT CTGGGATGCA GGACCCAAAT GGGACACTGA ACCGTCTGCT TGGGATGTAG AAAACTCGAT CGAGCTGCCT GGTCCTCCTG AGGATATAGA GACTGGACTG AGGAAGCAGA GCATCACACC AATATTTGAG GATAAATGGG TTTCGAGAAA GGGGCATTTC CTCGGCATCA TGGTCTGTAA CCATGCTTGT CGGACTGTGC AGAGTTCTCA AGTTGTGGCT CCCAATTCAG AACATGACGA TGGTACAATG GACATGCTCT TGGTTCACGG GTGTGGAAGA CTGAGGTTGC TGAGGTTTTT CATACTTCTG CAAACAGGTC GACACCTTTC TCTTCCGTAT GTCGAGTGTG TAAAGGTGAA ATCGGTGAAG ATAAAAGCGG GAAAAAATAC GCATGACAGT TGTGGTATAG ACGGAGAGCT GTTTGCGTTG CATGGAGAAG TGATATCGAC AATGCTACCT GAACAATGCA GACTGATCGG TAATGCTCCT GGACGACATT CATAGTTAAT TAATCTCATC CAAATTGTGA GGATGGAGAA TGAGAGAGAG TTTGGATGTT TATATATCTT GAATTCTTTT TTTTTGTCGG CGTCAAGTTT ACGGGTAAGT ATTATTATCT CATCTATGTG ATAAGAGAAG TAACATGAGA GAGTATACCA GTACATCCTT ATGTGCCATA AGTTCCCTAA AACTCTAAAA CCCCTTTGTA TATTCTTTTG CCCTTTTTTG TGTGTGTTTT GAATTATATA TGTACTGTGT ATGTGTTTCC TACAACGATT TGTGTGTTTT CATTT |
| Length | 2995 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9535317.. 9540165 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23450.3 |
| Description | long-chain base (LCB) kinase 1 |
| TAIR curator summary | Encodes a sphingosine kinase that specifically phosphorylates D-erythro-dihydrosphingosine (DHS), but not N-acetyl-DHS or D-threo-DHS. It also also phosphorylates D-erythro-sphingosine, trans-4, trans-8-sphingadienine and phytosphingosine. |
| Alias | [ATLCBK1][LCBK1][long-chain base (LCB) kinase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.9282 |
Ahg935637 | transducin family protein / WD-40 repeat family protein |
| 9.16515 |
Ahg486240 | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein |
| 16.0624 |
Ahg912993 | |
| 19.7484 |
Ahg470391 | Transducin family protein / WD-40 repeat family protein |
| 20.9762 |
Ahg486811 | Tudor/PWWP/MBT domain-containing protein |
| 24.7386 |
Ahg494596 | Glutathione S-transferase family protein |
| 26.2107 |
Ahg472928 | histidine kinase 3 |
| 28 |
Ahg494445 | F-box family protein |
| 30.0333 |
Ahg485488 | Protein phosphatase 2C family protein |
| 30.3974 |
Ahg921531 | Protein of unknown function (DUF1664) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|