Detail



ID : Ahg494166

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1
Sequence
GGGTCTCTCT AGATTTCGAT GAAATTTCGA GAATCTAGGG TTTCAAACTA AAATTGAGTC TTTGAGATTT GCCAATTTTC ATTATGAGCT CCATCAATAT CACTAACGTC ACCGTCTTGG ACAATCCAGC GCCATTCGTG AATCCATTCC AGTTCGAGAT CTCTTACGAA TGCTTGACTT CTCTCAAAGA CGATTTGGAA TGGAAGCTTA TCTACGTAGG ATCAGCTGAA GATGAAACCT ATGATCAAGT TTTGGAAAGT GTTCTTGTTG GTCCTGTTAA CGTTGGGAAT TACCGATTTG TGTTACAGGC TGACTCTCCA GATCCGTTAA AGATTCGTGA GGAAGATATT ATTGGTGTAA CTGTGCTATT GTTGACTTGC TCATACATGG ATCAAGAGTT TATTAGAGTT GGCTATTATG TCAACAATGA CTATGATGAT GAACAACTCA GGGAAGAGCC TCCTACCAAG GTTTTGATTA ATAAAGTCCA AAGGAACATA CTCACGGACA AACCTCGAGT CACTAAGTTC CCTGTCAACT TTCATCCTGC GGATGAGCAG GCTGGTGGTG ATGGGCCTCC ACCTGCTGAA CCATTTGATG ATTCTGTTGT GAATGGAGAA GCTCGAGTGT TGGTTGAGCA GTCACAAAAA CTCCAGGAGA CATGATTCTA GTTTGACTCA AGCCTAACTG GAAACTTGAT TAGAACTATC GTCTCAATAC TAATCGAAAG 
Length730
Protein Sequence
Protein Residue
Map Locationscaffold_7: 22905720.. 22906945
Download Sequence
A.thaliana
AGI-codeAT5G38110.1
Descriptionanti- silencing function 1b
TAIR curator summaryThis gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.
Alias[ASF1B][SGA01][SGA1][anti- silencing function 1b]
Gene coexpression
MR
MR Locus Description
47.0106 Ahg484333
48.3115 Ahg889546
56.3205 Ahg908045 DNA primases;DNA primases
62.2334 Ahg471935 MADS-box transcription factor family protein
64.8074 Ahg932851
74.7529 Ahg925332
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression