Detail



ID : Ahg495204

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|495204|fgenesh2_kg.8__1020__AT5G51330.1
Sequence
CGAGAGCAAA AATCATGAGT GGAACGATGT TCGTGAAACG GAATCCGATT AGAGAAACCT CCGCCGGGAA AAACTCTCCG CCGTCGTCAC CGACTTTGAA TGTTGCAGTT GCGCATATAA GAGTTGGATC TTATTACGAA ATCGATTCTT CGATTCTTCC TCACAGATCG CCGGAGAATC TTAAATCGAT TAGAGTCATC ATGGTTGGCA AAATCACGGC GAGCGATGTG TCTCTCCGAT ACCCAAGCAT GTGTTCACTC CGATCGCATT TCGATTACAG TAGAATGAAC CGGAATAAAC CGTTGAAGAA GAGGAGTGGC GGTGGTCTTC TTCCTGTTTT TGACGAGAGT CATGTGATAG CTTCGGAGCT AGCTGGAGAC TTGCTTTATA GAAGAATCGC ACCTCATGAA GTTTCTATGA ATAGAAATTC CTGGAGTTTC TGGGTTTCTG GTTCTTCTCG CAGGAACAGA TTTCCACGAA GGGAGATGGT TTCTCAACCG GCGTACAATA CTAGCCTCTG TCGCGCGGCT TCACCGGAGG GAAAGTGCTG GTCTGAGCTG AAATCGGGAG GGATGATTAA GTGGGGAAGG AGATTGCGTG TGCAGTATCA GAGTCGGCAT ATTGATTCTA AGAAGAATAA GGAAGGTGAG GAGAGTTCTA GAGTGAAGGA TGAAGAGGCT TGCAAAGAAG AGATAGAGAA AGAGGATGAT GATGATGATG GGAATGAAAC AGAAGGCACT AAACAAGAAG ATGCAAAGGA GATAACTGAT GGAAATCGTA AGAGAAAGCT GATTGAATCA AGTACTGAGA GACTCGCTCA GAAGGCTAAG GTCAGAGTTG AGGTCAGAAG CAAGGGAACG CTGATTGGTG ACACGGGTCT ATTAGATCAT CTGCTTAAGC ACATGGCTAG TAAGGTGGCT CCTGGAGGTC AAGATAGGTT TAGGAGAAAG CACAATGCAG ATGGGGCAAT GGAGTATTGG TTGGAGAGTT CTGATTTGAT TCACATAAGG AAAGAAGCAG GAGTTGAAGA TCCTTACTGG ACTCCTCCAC CTGGTTGGAA GCTTGGTGAC AACCCTACTC AAGATCCTGT CTGCGCCGGA GAAATCCGTG ACATCAGAGA AGAATTAGCT AGCCTGAAAA GAGGATTGGA GAAACTCGCA TCAAAGAAGG AAGAGGAGGA GCTTGTTATC GTGACTACAC CTAATTCTTG TGTTACTAGT CAGAATGATA ATCTGATGAC TCCAGCAAAG GAAATCTACG CTGATCTGCT AAAGAAGAAA TACAAAATTG AGGACCAGCT AGTGATAATT GGAGAAACCT TGCGTGACAT GGAGGAAGGC ATGGGATACC TAAAGAAAAC AGTGGACGAG AACTATCCTA GAAAGCCAGA CTCAACAGAG ACACCTTTGC TACTAGAGGA TTCACCACCA ATACAGACAC TAGAAGGAGA AGTGAAGGTG GTGAACAAGG GTAACCAAAT CACAGAGTCA CCTCAAAACA GAGAAAAAGG CAAGAAGCAT GATCAACAAG AACGATCACC ACTTTCACTT ATAAGCAACA CTGGTTTCAG AATCTGCAGG CCTGTGGGGA TTTTCGCATG GCCCAAATTG TCTGCTCTTG CTGCTGCTAC TGATACTAAT GCTTCTTCGC TAAGTCACCG ACCAGCCTAC CCATCTCCTT GTCCAGTCAA GCCACTTGCA GCTAAGCGTC CTCTCGGCTT GACATTTCCC TTCACCATCA TACCCGAAGA AGCTCCCACA AATCTATTCA ACGTTTGAAG TTGCCATCGC AAACTGATGC ATCAGATCTT ACTT 
Length1814
Protein Sequence
Protein Residue
Map Locationscaffold_8: 13602349.. 13605207
Download Sequence
A.thaliana
AGI-codeAT5G51330.1
DescriptionSWITCH1
TAIR curator summaryEncodes novel protein involved in sister chromatid cohesion and meiotic chromosome organization during both male and female meiosis. Gene has two alternate transcripts which produce two similar proteins, one 57 aa shorter than the other.
Alias[DYAD][SWI1][SWITCH1]
Gene coexpression
MR
MR Locus Description
27.0924 Ahg351609 Protein of Unknown Function (DUF239)
36.0832 Ahg323966
39.7995 Ahg945592
45.6508 Ahg896275
51.0882 Ahg484096 RING/FYVE/PHD zinc finger superfamily protein
57.8273 Ahg332898 homeobox 53
71.9722 Ahg942510 transposable element gene
72.5879 Ahg943595 copper ion binding;electron carriers
73.8918 Ahg331076 dephospho-CoA kinase family
74.0135 Ahg921700 ENTH/VHS/GAT family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression