| Annotation |
|---|
| Description | jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1 |
| Sequence |
AAGAAAACAA CGCTAGAACA AAGAGAGTTT GATTGATTCA CTTGAAAAAA GAGAAAACAC AGCTTTGGAA AATGGAGTCG CAGTTGACAC GTCCTTATGG TCATGAGCAA GTAGAAGAAC CAATCAGAAT TCACCATCCT GAGGAAGACG AGCATCATGA TAAGGGAGCA TCTAAAGTGT TAAGAAAAGT AAAAGAAAAA GCTAAGAAGA TCAAGAACAG TCTCACTAAA CATGGCAATG GTCATGATCA CGATGTTGAA GAAGAAGAAG ATGAGTATGA CGAGCAAGAC CCAGAAGAGC ACGGAGCACC AGTGTATGAA TCCTCTGCCG TGAGAGGTGG TGTAACGGGT AAACCTGAGT CTTTAAGTCA TACCGGAGAA ACTAATGTTC CAGCACCGGA GGAGATTGTT CCTCCAGGAA CAAAGGTTTT TCCTGTCGTG TCTTCCGAGC ACACCAAACC CATTGAGCCT GTTTCATTAC AAGATACCTC TTACGGACAT GAGGCACTGT CTGCTCCAGG AGGAGGTTCG GATTATCTTA GTGGTGTATC TAATTATCAG TCCAAAGTTA CTGATCCCAC TCATAAAGGT GGAGAAGCTG GAGTACCAGA GATTGCTGAG TCTCTTAGTC GGATGAAAGT GACTGATGAG TCTCCTGATC AGAAATCAAG ACAAGGATTT GGAGAAGACT TACCGACGAG AAGCCAAGAA TTTGGTCTGA AGAACGAATC TGATATCAGC AAGGATTCTC CGGCAAGACT TGGAGGAGAA TCAAGAGCTG GTCTCGGGGA AGATTTTCAG AGAAGAAGTG ATGATGTGAA AGCAGAGACT GGGTTGGGAA GAGACTTACC GACCGGAACT CATGATCAGT TCTCACCGGA ACTATCTCGT CCTAAAGAGA GAGATGATTT TGAGGAAACC AGAGATGAGA CGAAACAGGA GAGGAAACCG AGCACCTACA CAGAGCAGTT AGCTTCAGCT ACATCAGCCA TAACCAACAA AGCTATAGCG GCTAAGAACG TCGTCGCCTC AAAGCTAGGT TACGGAGAAA GCGGCGGCGG GCAATACGAA AGCGCTGAAA AGGATGAAAC TCCGAGGTCT GCTACGGGTT ATGGGCAGAA AGTGGCGGGA ACTGTTGCTG AGAAGTTGAC TCCGGTCTAC GAAAAGGTCA AAGAGACAGG ATCAGCCGTG ATGACGAAGC TACCTATCTC CGGAGGTGGA AGTGGAATGA AGGAGACGCA ACAAGGTGAA GAGAAAGGTG TGTCGACTAG AGATTATCTA TCGGAGAAGC TGAGACCTGG AGAAGATGAC AAAGCTTTAT CGGAGGTGAT AGCTGAGAAA CTTCATTTTG GAGGAGGAGA AAAGAAGACA ACGGCGACAA AGGAGGTGGA AGTGACGGTG GAGAAGATAC CTTCCGACCA GATATCGGAG GGGAGAGAAC ATGGTGAGGC GGTTACTGAG GAAGGGAAAG AAGAAGGAAT GGTGGGGAAA GTTAAAGGAG CGGTCACTTC TTGGCTCGGT GGTAAGCCGA AATCGCCACA TTCAGTTGAA GAGTCTCCAC AATCACTTGG CACCACCGTT GGGACTATGG GGTTTACGGA TTCCAGTGGA AGTAAGTTGG GTGGTACTGG CGGAGCTAAG GGAGTTCAAG ATTCTGGGAA CTGAAGATTT GGGGTTTTTC CTTCGAATGT CTGTGTTTTT GTATGAT |
| Length | 1707 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 14159841.. 14161932 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G52300.1 |
| Description | CAP160 protein |
| TAIR curator summary | encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi. |
| Alias | [LTI65][RD29B][LOW-TEMPERATURE-INDUCED 65][RESPONSIVE TO DESSICATION 29B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3 |
Ahg483960 | TSPO(outer membrane tryptophan-rich sensory protein)-related |
| 3.16228 |
Ahg325294 | Late Embryogenesis Abundant 4-5 |
| 3.16228 |
Ahg496967 | Dehydrin family protein |
| 4 |
Ahg934938 | Transmembrane amino acid transporter family protein |
| 4.58258 |
Ahg356702 | heat shock transcription factor A6A |
| 6.32456 |
Ahg487924 | CBL-interacting protein kinase 5 |
| 6.63325 |
Ahg483012 | delta1-pyrroline-5-carboxylate synthase 1 |
| 7.34847 |
Ahg921008 | cold-regulated 47 |
| 7.74597 |
Ahg952470 | delta1-pyrroline-5-carboxylate synthase 1 |
| 8.12404 |
Ahg486924 | RING/U-box superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|