Detail


ID : Ahg496639

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|496639|fgenesh2_kg.8__2455__AT5G64342.1
Sequence
TCTTTAGAAA TATTTCGTAA AAAAAAAATT CTGCGTTTAC ACATTATTGC TCGTTGGTCA CTTCATCTCT CTTATCCCTT TGCTTTTCCA TTGATTCAGC TCATAAACCA AAAAAGTCTC ATCGTTCTCT CTGGATCTGA GCGAAAGATC GTTCCTTTGT AAGCTACTAA AGTAGATTGA TGATCAGAAT CAATTAGAGT GTGTATATAA GAAGAAGAGA AAGAGAAAAC AGCATGTGTA TTGCCGTATA CCGTAAAGTT TTGCGCTTGA ATCTGTATTG CCGTGTGATT CTGTAAATTG TTTCACCTTT GAACCAACAC CTTCAAGAGT CAAATCCTCT TCTTTGTTCT TATTCATCTT CCCTTCGTTT TCGATATATT TTAAACACTT TTGAAAATGG GATCACAACA TTTTTATGTG TACCATTGTG AACAAAGAAT CAGCTAGACT AAAGCTTACT GTCCTTCCAC AACAAAAGTT TCCTCCTTTT GGTTTAAGAT TCCCTCAAAG TTATGGTGTG CCAATCACCT GGTAAGACAA GATTTCGAGC ATTGAAGTAC GAGACAGGAA ACGCTAACAA ATCAACAATT GTAGTGAGAG TTATTGAATG CTATCAACCG ATGGATAATT GCCAGGCTGA GTACTTCAGA CTTCTACTCA AACCAGTCAC GTAGTTGGTT GGTGATATTT CGCTGCATTT TTCGATCTGG GATTTTTTTC GTTCGTCTTT CTTTTACTAT TTTCTCAAAA AGGGCACAAG AAGTATTGCA TTCACTCAAT AGAGCAACTT AACAATCGTG TTGTACTTTT TAAAGCTCCC TTGAGCTAAA CTGCTAAGAG CATGCCTCTA GATACGAGGC AACGGGATTT GCCTCTGGGC TTAAGTCCTC AAACTTGCTT CGAGGATATA GCAGGTCGGT CTGTCCATCC TGGAATCCCT CTCCCTGAGC TTGGGAAACT ATTTGCAGCT AAGCTTCAGG CTCGCTGTTT GCAGCCACCA CCATTCCTTT CTTTGCTGTG CAGCCATGAT AAGGAGTCTT ATGGAAAACG ATTCTCACGG TCTGACATGC GGTCTTGGTG CGCTGCTGCT GCTACTACTA CTACTACTAC TCCACATGGA GCACTAGAGT CTTCTCAGAA AAGACTTTTG ATATTCGATC AGTCAGGAAA CCAGACTCGT CTATTACAAT GTCCATTTCC TCTACGGTTT CCATCTCATG CGGCGGCAGA ACCAGTGAAA CTCTCTGAGT TACAAGGTAT AGAGAAAGCT TTCAAGGAAG ATGGTGAAGA GTTTGACAAG AACCATTTAG ATGGAACAGA GTCAGAAATG CATGAAGACA CTGAGGAGAT CAATGCATTG CTGTATTCAG ATGATGATTA TGATGATGAT GATGATTGTG AGAGTGATGA TGAAGTAATG AGCACTGGTC ACTCTCCTTA TCCAAATGAA CGAGTTTGCA ACAAAAGGGA ATTAGAAGAA ATCGATGGTC TTTGTAAAAG GCAGAAACTA CTGGATAAGG TCAACAACAG CAGCAACTCA TCATCACTTG TGGGCACTAC GAGTTCCACA AAACTCAATG GATCGTCCTT TCTTAAGGAC AAAAAGCTCC CTGAATCAAA AAACATCTGG ACCAAAGAAG ACACTGGTTC TGGTCTGAGC AACGAGCAGT CGAAGAAAGA CAAGATCCGC ACAGCTCTGA AAATACTCGA GAGCATAGTC CCCGGTGCAA AAGGAAACGA AGCGCTCTTA CTTCTGGACG AAGCAATTGA TTACCTAAAG TTACTGAAAC GAGACTTAAT CTCCACAGAG GTTAAGAACC AAAGCTCCAC CACTCACAAG TCACCAATCT TGTTGGTTAA AGAGACAACA TGGGGAACAA GAAATCTGCA GACAGATAAG GCATGAAAGA TTCTCACGAG TTAAAACGTG TGAAGTGGGT TTTTGGGTAC GTATCCTCTG CACCAGCTTT TTAGCTGTAT ATAGTGGACT ACTTTTAAGT ATATATAATA TGCTACTGCA ATTTCAAAAA GTTAAAGAAG AAAAGAGGTC ACTTTCTTCT TCTCTCTGTG TGGAAAGAAA AGCCAAAGTC GTCATGGTCA TTGATCGACA ATGATTATCT TTTTTGGCTG AGTGTGGATG GTGAAATCAA AAGGCAATAT TCAAAGTCTC ATCCTCAAGC TCGCGTGGTC TATGAATCTC CCCTAAGGTA ATAAAATGTC TCTGACCCAC ACACACTCTT TTGTCCATAT GATGACTAGA TGGGTCCATG ATTTTTATGA AATATTGATG TCATGTTCAT GTAATTAATT TGAGTGTCTG TAATAATGCA AACTATTCCT TTGTCTTTTG CTTCCAACCC ACATGCTACT GGTTTTGTTG TGTCTCGTTG GTTGTATTGT TAAATGGTTT TGTAATAAAC AAATGGGTTT TTGGTTTGTG ATAAAAA
Length2447
Protein Sequence
Protein Residue
Map Locationscaffold_8: 20136071.. 20139053
Download Sequence
A.thaliana
AGI-codeAT5G64341.1
Descriptionconserved peptide upstream open reading frame 40
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF40 represents a conserved upstream opening reading frame relative to major ORF AT5G64340.1
Alias[CPuORF40][conserved peptide upstream open reading frame 40]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg473159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
8.48528 Ahg472299 Protein kinase superfamily protein
10.3923 Ahg484098 Leucine-rich repeat protein kinase family protein
12 Ahg927990 Ankyrin repeat family protein
12.49 Ahg951066 1-deoxy-D-xylulose 5-phosphate reductoisomerase
12.6491 Ahg933625 SHAGGY-related protein kinase dZeta
13.7477 Ahg348499 Concanavalin A-like lectin family protein
14.8661 Ahg478314 RAB GTPase homolog E1E
17.2916 Ahg479415 AP2/B3-like transcriptional factor family protein
18.9737 Ahg329352 sterol C4-methyl oxidase 1-2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression