Detail


ID : Ahg496745

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|496745|fgenesh2_kg.8__2561__AT5G65200.1
Sequence
CAGAAAATCA CGAAAGATGA ATTCAAACCC TTAATTCCTC TCAAAATAAA ACCCAAAACC CTTTTCAGAT ATCAAACTCA CCACCAATCA CCGACCGTTG ATTTGTTGCA GATGGGTAAA AACGGACGGC TCAGATGGAA TCCTTTCAAC CACAGATCGT CTTCACAACA ACAAGAAGCT CCGGTCGAAT TCCTCTGTTC TATTTCAAAA TCAGTAATGT CTGACCCTGT TGTTGTATCT TCCGGTCAAA CCTTCGAACG TGTCTGTGTT CAAGTCTGTC GCGACCTAAA CTTTCTCCCC AAACTCAACA ACGACGACGA CGATTCTCAA CCCGATTTCT CCAACATCAT CCCTAACCTA AACATGAAAT CAACAATCGA TACTTGGTGC GACACCGTTG GCGTCTCTCG TCCTCAGCCA CCTGATTACT CCGCCGTCGA GAGAATTTTA CGGCAACAGA TGCCTCCGCC GGACGTTGAG ATTCGTGTCT CCGAGCAAGA GCTTCTCAGT GCTGTAGCTC ACCGAGCTCC GATGATTATT CACCACGCTG ATTCTGAACT CATGGGAAGG AGAGATTTCA ACAACTCCAC GACCTCCTCT GATGAATCTG TAATCGTTGC TCAGAGTCCT TTCACTCCTC TTCCTTTAAC AACACGACCC GCTTGCTTCT CTCCATCTCC ATCATCTTCT TCCTCCGAAA TCGAAACCCT AACGCATCAC AATTTCTTCT CTAGTTCAAC TTCCACCGCC ACAGAAGCGG ACGAAGAGAT TTACAACAAG CTTAAGAGCA GTGAGATTTT CGATCAAGAG CAAGGTTTGA TTATGATGAG GAAGATGACT CGTACTAAAG ATGAAGCTAG GGTTTCGCTT TGTTCTCCTC GGATTCTTTC TCTGTTGAAG AACATGATTG TTTCGAGATA CAGTTTAGTG CAGACGAATT CGTTAGCTTC GCTTGTGAAT CTATCTTTGG ATAAGCAGAA CAAATTGACG ATTGTTCGGT TAGGATTTGT TCCGATTTTG ATCGATGTTT TGAAATCAGG ATCTAGAGAA GCTCAAGAAC ACGCAGCGGG ATCAATCTTT AGTCTTTCTC TTGAAGATGA TAATAAAATG CCGATTGGTG TTTTAGGAGC GCTTCAGCCA TTGCTTCACG CTTTACGAGC TGCTGAGAGT GATCGGACGC GGCATGATTC GGCTCTCGCG CTTTACCATC TGTCGTTGAA TCAGACGAAT CGGTCGAAGC TCGTTAGGCT TGGAGCAGTT CCAGCGCTTT TCTCGATGGT TAGATCAGGT GAATCGGCGA GTAGAGCATT GTTGGTGATC TGTAATTTAG CGTGTTGTAG CGAAGGACGA TCAGCAATGC TTGATGCAAA TGCGGTTGCG ATTCTCGTAG GGAAGCTACG TGAGGAGAGG ACGGATGAGC CAACAGAGGC TCGGTCATCG TCTTCAGCTC GTGAGAATTG CGTGGCGGCG TTGTTCGCGT TGAGCCACGA GAGTCTCCGA TTCAAGGGTT TAGCGAAAGA GGCAAGAGCA GTGGAAGTGC TGAAGGAAGT GGAAGAGAGA GGAACAGAGA GAGCGAGAGA GAAAGCGAAG AAGATTCTTC AGTTGATGAG AGAAAGAGTG CCGGAGGATG ATGAAGAAGA CGGTGAAGGA TCAATTGATT GGGACCGAGT TATCGACTCG AACGGCTCGA TTCGATCCAG ATTCCGAGTT GGTGGTGGTA GAAACAGAAT GGTCACTCAA AACTCCTCTG GCTTCTAAGT CCCATTCCAT TTGTTGTTGT ATAGACATTG AAAATGTTTT GTGATTGAAA TTTTTTTGTA TCTTGACTTG AAATATTTGA GAAAAAAA
Length1848
Protein Sequence
Protein Residue
Map Locationscaffold_8: 20494635.. 20496509
Download Sequence
A.thaliana
AGI-codeAT5G65200.1
Descriptionplant U-box 38
TAIR curator summaryEncodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Alias[ATPUB38][PUB38][ARABIDOPSIS THALIANA PLANT U-BOX 38][plant U-box 38]
Gene coexpression
MR
MR Locus Description
11.1803 Ahg477131 syntaxin of plants 52
19.4165 Ahg325246 hyaluronan mediated motility receptor-related
21.0238 Ahg476803 RNA-binding (RRM/RBD/RNP motifs) family protein
31.9374 Ahg496070 telomeric repeat binding protein 1
38.7943 Ahg314643 RING/U-box superfamily protein
40.4722 Ahg471880
44.0795 Ahg949982
51.8073 Ahg476701 salt tolerance homolog2
54.0925 Ahg494461 Cyclin family protein
55.6776 Ahg470152
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression