Detail



ID : Ahg497279

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|497279|fgenesh2_kg.126__1__AT3G20520.1
Sequence
GAAAGCTCTC CACTACCATG GCGTGCCCTA GAGTGATTTT TCTGATTCTG ATCAAGTTCT TCATACTACA GACTGCTTTA TCAAGTTCTT GGAAAACATT AAGTGGGAAA CCTCCGGCTG TGATTGCTCG AGGCGGATTC TCTGGTATGT TTCCAGATTC CAGTATTCAA GCATATCAGT TGGTGAATAT AACAACTTCA CCAGAAGTAA TGCTCTGGTG TGATCTTCAA CTAACAAAGG ATGGTGTTGG AATCTGCTTT CCAAATCTGA ATCTTCACAA TGGTTCTAAT GTCATAAGCA TTTACCCAAA TTACAAAGAA AGGTTTTCTG TTGATTTCAC ATGGAAGGAA CTCTCTGATG TGAAATTGGC CCAGGGTGTT ATCTCAAGAC CAGAAATATT CGATGATGTT TCCTCGATAT TGCCTATTGA AGAAGTAGCA AAGTTGACAG ATTCAGGCCT CTGGTTGAAC ATTCAGGACA GTGCTTTCTA CACGCAACAC AATTTGAGTA TGAGAAACTC TGTTATCTCT CTATCAAGAC GCCTGATAGT TAACTTCATA TCTTCTCCAG AGATCAGTTT CCTGAAGAGC ATGAAAAACA GTGTCAAGCC GACTGTGACA AAACTCATCT TTAAGTTTCT AAAACAAGAC GACATAGAAC CCTTCACCAA CCAATCTTAC GGCTCTCTTG CCAAGAATTT AAGTTATATA AGAACCTTTT CTTCTGGAAT TCTTGTTCCA AAATCTTACA TATGGCCCGT TGATTCAGCT CTTTACCTAC AACCCCACAC GTCGCTTGTA ACAGATGCTC ATAAAGAAGG TTTACAAGTT TTCGCCTCGG AGTTTGCCAA TGATTTTGTA ATTGCTTATA ACTACAGCTA TGATCCAACG GCTGAGTATT TATCTTTCAT TGACAACGGA AACTTCTCGG TTGATGGTTT CCTATCAGAC TTTCCGGTGA CTCCATATCG AGCCATCAAT TGTTTCTCTC ATTTGGACAC CAAGAAAGCT AAGGAGCAAG CTAAGATAAC TATTATCTCG AAGAATGGAG CGAGTGGAGA TTTCCCGGGC TGTACTGACT TGGCGTATCA GAGAGCTGCA ACCGACGGGG CTGACATTCT TGATTGCAAT GTCCAGATGT CTAAAGACAA GATTCCCTTT TGTATGAGCT CCATTGATCT TATAAACAGC ACTAATGTCA TCGAAACAAG CTTTAGAAAT CTGTCATCAG TAGCTTCAGA GATTCAACCA CAGAGAAGTG GGATCTACAC TTTCAGCCTG ACCATGTCTC AGATACAAAC CTTGAAGCCT ACTATTTCGA ATCTTGAAAG GGACTCTGGT TTATTCAGAA ACCCAAGAAA CAAGAAGGCT GGAAAGTTTC TTACATTATC CGAGTTCTTG TTTCTTCCAA ACCATTACAG CTCTCTCTTA GGCATCTTGA TAGAAGTGGA GAATGCAGCT TATTTAGTGG AACATCAAGG AATAAGCGTG GTCGATGCGG TACTAGATGA ATTGAAGAGA GCTACTAATC AGCAAAACAA GACAAGTGCA AGAACAATAC TGATCCAGTC TACTGATAAG TCTGTCTTGA TGAAGTTCAA GGAGAAGAAC AAAATGAATC ATGACGAGCT AGTCTATAGA GTCGAGGAAA ACATCGGTGA TGTAGCAGAT TCGGCGATCA AAGACATCAA GAATTTCGCA GGCTCGATTG TCATCAGTAA GAAATCAGTC TTTCCCTACG TAGGGTTTAT CACCCTTACG CAGGGGACAA ATGTTGTTTC AAAGCTAAAA TCAAGCGGGC TTCGTGTTTA CGTAGAAAGA TTTAGCAACG AGTTTGTAAC TCAAGCATTT GACTTTTACG AGGATCCAAC GTTGGAGATA GACTCTTTTG TCCGCGATAT CCAAATTGAT GGCATCATCA CTGACTTCCC AGCAACCACT GCAAGATACA GAAAGAACCA GTGTTACGGC AAATTTGTTC TGCCTGAAAC CGGTGAGCTC AGAACTTTCG GGAATCCATT GCTTCTTCCA CCAGCTGAAG CTCCATATCC ATTACTAGGT GACTCAGATG TGACGGAACC ACCATTGCCT GAAGTAAGAA GTCAGCCTCC TGCTTTTTCA CCATCAAAGG CAGAGGAAAA AGCAATAGAA GTTCCCTTTG CATTTATAGC CATG 
Length2174
Protein Sequence
Protein Residue
Map Locationscaffold_126: 20.. 2949
Download Sequence
A.thaliana
AGI-codeAT3G20520.1
DescriptionSHV3-like 3
TAIR curator summary
Alias[GDPDL5][SVL3][Glycerophosphodiester phosphodiesterase (GDPD) like 5][SHV3-like 3]
Gene coexpression
MR
MR Locus Description
1 Ahg479577 SHV3-like 3
9.05539 Ahg932849
9.8995 Ahg933209
11.0905 Virus0721
16.7332 Ahg925283 Protein of unknown function (DUF784)
20.3961 Virus0993
26.0384 Ahg921006 Protein kinase protein with tetratricopeptide repeat domain
26.6458 Ahg927836
30.8869 Virus0713
34.2929 Virus0355
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression