Detail



ID : Ahg497335

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|497335|fgenesh2_kg.230__7__AT3G15390.1
Sequence
ATGTCTATGA TTGCAAGCTC TTCGAATAGT GATCCTGATT CAAGAAGCTT ACAAGTGCTT CTCGATGCCT TTGGTTCTCG TTTTTCGCTT GATGACATTG CTGCTGCTTA TTGCCAAGCA AGTCAGAATG TCGATGTAGC TGGTGAGATT CTCTTTGCAA TGACTGAAAA GACGCCTCAA TGTGACCACG TTGAAATGAA GAACGAAACC TCAAAACCAA GTCAGGTCTA TGTTCCCAAG GAAGTTCGAC GACAAGAGGA TAGCAAAGCC AAAGTATGGA GGCCGAAGAG AAATTCTATA TCAGTTGGTA CTGTTTCAAG TGTTATCGGT AAGGAGTATG CTAGAACCAG GCCTATATCA AATGCTCCCA GAGAAGCAAC TAAGCCAATG AAGATAGACT CAAGGGATAT TCCAGAAACT GAGTTATGGA GTGAAGAAAT GCCAAAGAGT AACGAGCCAA AGACAAACAG GGCTCCAACT GATGTGGAGG AATTTATCGT TAAGATGCTT GGAGAAGGCT TTCAAGCTAG CCAAGATGTC ATTCACCAGG TTCTTGGCGT ATGCGGATAT GATGTGAAGA AGAGTACGGA GAAACTGCTT GACTTGTCTG ATACCAAGAA ATATGCTGAT GTTGGAATTT CCAATGAAGT TGTGAGCTTT TGTTATGACT TTAAGTTTGG TTCAGAGGAA GGGCGTAATG CTAAGAATGG TCTTGAAAAG GAAGTTTTAG AAGCTTTGTT CTCAGGTACG GAAAGATATG TGGGAGAACC AAAAGTAACT CGACATTTTG GAGAAAGGAG ACCAAGAGTT GCTGGTCGTC CTGTTTTTAA ACCTCTGGAG GACCCTTTTC AAGAGAGAGT AGTTGCTGTA AAAAAATCGT CCAATACATC TAAAGAAGAT GAAGATGAAA ATGAGTTTAA GGCACATCGT AAAGCAGTAC GTGAGCATTT GAATCAGATG AAAGAATATT ATGGAGCTGC TGCAGAAGCA TTCTCCAAAG GAGAAACCGA GCGAGCACAC AGACTCGTGG AGAAGGGACA CTTTTTTGGA CAAAAAGCCC GAGAAGCGGA TGACAAATCT ATAGCAAAGA TGATTGATGT CAAGAAAGAC GATGATTCGA CTTACGAGGA GGACGAGGTA GTGACAGTGA ATGTGAATGA ACACGAAACA AAGGAAGCAC TTCGTCTTCT CAAGCGCCAA CTAAATTTCT TCTCTGGCAT TTCAACTTTC AAGTACCTCA GAGTCGCATT GGGTGACAAA AAGGAAGATT TCAAGAGCAA ACGAAAGCAT ATCGTTAAGC TGCTGGAGGG AGAATCCATT GCTTGGACTG AAGAAGATAG CGGCCTCGTG ATGATGATTC GTGTTGATAA GATTGACCCC AAGAAATTGA GTTTTGCCAA GAAATAA 
Length1407
Protein Sequence
Protein Residue
Map Locationscaffold_230: 4394.. 7245
Download Sequence
A.thaliana
AGI-codeAT3G15390.1
Descriptionsilencing defective 5
TAIR curator summaryEncodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.
Alias[SDE5][silencing defective 5]
Gene coexpression
MR
MR Locus Description
1 Ahg478977 silencing defective 5
63.7966 Ahg902523
69.857 Ahg887587
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression