| Annotation |
|---|
| Description | jgi|Araly1|497391|fgenesh2_kg.301__1__AT2G40080.1 |
| Sequence |
AATTAAAAAT TATTATGAAG AGGAACGGCG AGACGAAACG GCGGAGGAAC GTGGCGGAGG AAGCAGAGCA GGGAGGAGGA GGAGAAGATC CAGCGATGTG GGAGAATCTT GACCGGAATT TCAGACAAGT GCAATCAGTT TTGGACAGAA ACAGATCACT GATTCAACAA GTCAACGACA ATCACCAATC GAGAATGGCT GATAACATGT CGAAGAACGT TGCTTTGATT CAAGAACTCA ACGGAAACAT TTCCAAGGTT GTTAACATGT ATTCTGATCT CAATACTAGT TTCTCATCGG GGTTTCACGG TGGAAAGAAC GGTCACGACG GTGGTGGTGC TGCCGGAACA AGAGCTTAAT GAACCCGAAT CAAATTGTTT CTTCTTAGTT GGACCGGCCG GTTTGAGAAT TTTGAACCAG TCCGGTTCAA GCTAGGAAAA AAGTTATTAT ATGTTAGTTT TTATTGCAAT GATGATTGTT GTTATTAGAA TAATCCGTGG GAGCAAACCC ATCTATTGGG TTATTTTAAT TATGGTTTTG AGTCTTTTTC AATGTGTCTC TACTGCAATT TCTCTAATGA TAATAATAAT AATTG |
| Length | 595 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_301: 5779.. 6383 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G40080.1 |
| Description | Protein of unknown function (DUF1313) |
| TAIR curator summary | Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. |
| Alias | [ELF4][EARLY FLOWERING 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.7178 |
Ahg352314 | Copper amine oxidase family protein |
| 8.7178 |
Ahg934838 | Integrase-type DNA-binding superfamily protein |
| 10.0995 |
Ahg919779 | branched-chain amino acid transaminase 2 |
| 12 |
Ahg484673 | NAC domain containing protein 3 |
| 18.1659 |
Ahg944516 | Protein of unknown function (DUF1685) |
| 20.1494 |
Ahg478219 | Protein of unknown function (DUF962) |
| 20.9762 |
Ahg925985 | DNA-binding HORMA family protein |
| 21 |
Ahg474732 | |
| 24.454 |
Ahg921232 | Sec14p-like phosphatidylinositol transfer family protein |
| 25.3772 |
Ahg944382 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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