Detail



ID : Ahg497411

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|497411|fgenesh2_kg.371__2__AT2G45890.1
Sequence
AGCCAACAAC GCAAGAGAAG AATTTGAAAC TCACCAAAAA ATCGTGATGG AGAGTTCATT GAATTCCGAA CAAAACGAGG GAACTCCGAC GAGCTCTGTT TCTTCGCCAT ATCGGAGAAC ATACTCTGAT ATCTCCGGAT TATCCCACCG GTTCGACGTT CAGAATTTTT ATAACCGGCC GTCGAACACT AACGCTGTTG TCTTGAGTGG CCATGAAGAA GATGTCTCCG AAGACGCCGT GGAACCAAAA GATGATGTCG TCAATGACGG AGATGGAGAC GAGGAAGACA GCGACATTGA TTCTGCAGAA GATGCAGAGC TAGAGATGAT GAGAGAAAGA TTTGCGAAGC TATTGCTTGG TGAAGACATG TCAGGAAGTG GGAAAGGAGT TTGTACCGCT GTTACTGTCT CAAACTCCAT AACCAATCTC TATGCGACTG TGTTTGGACA AAGTTTAAGG TTACAACCAT TGAGTACAGA GAAGAAAGAG TTATGGAAGC GAGAGATGAA TTGTTTCATG TCTATTTGTG ATTACATTGT CGAAGTTATT CCAAGATCTC TTGGTACTAA CGTTGAGATA ACAGAAACAA AGCTAAGATC TGATATTCTC ATGAGTCTTC CTGCTTTGAG AAAACTCGAT AATATGCTAA TGGAAATATT GGATAGTTTT ACGGAGAACG AGTTCTGGTA CGTTGAAAGA GGAAGCTCAT CGATGAACTC GAGCGGTGGT GGCAGAGATT CAGGAACGTT TAGGAAAGTG GTGGTTCAAC GGAAAGACGA GAAGTGGTGG CTTCCGGTGC CATGTGTTCC TGCTGAAGGT TTATCGGAAG AAGAACGAAA GAATTTGCGT CACAAACGTG ATTGTGCCAG TCAGATACAT AAAGCAGCAT TGGCCATTAA CGATTCCACT CTTAATGACA TGGATATTCC TGATTCTTAT CTCACCACTC TTCCAAAGAG TGGGAAAGCA AGTGTAGGAG ACGTGATATA CAAGCAACTG TGCACTGCCG AGAAGTTTTA TCCTGACCAG CTTCTCGACA TCTTGAAGAT AACATCTGAG CATGAGGCGC TTGAGCTCGC CGACAAAGTT GAGGCTTCAC TAGTTACGTG GAGGCGTAAG ACTGGAGGAT TGACTCACTC CAAGTCCTCA TGGGACATGA TGAAAGATAT CGGTGGCGAT GCAGATCGTG GCAATGACAA GAACCACATT CTTGCGGCTC GAGCAAGGAG CTTACTTTTC TGTCTGAAGC AGAGATACCC TGAACTTTCT CAGACCTCAC TTGACATCTG CAAGATTCAG TTTAACCGAG ATGTTGGAAA GGCGGTATTG GAGAGCTATT CGAGGGTTTT AGAAGGTTTG GCTTATAATG TTGTGTCGTG GATTGATGAT GTTCTTTACG TCGACAGAAC AGTGAGGAAC AGAGAGGATT AGGGTTTTCA TACTGAGTTT TTTCTTTTGA GCATCGACAA AAAATGTTTA CCTTTTTTGG ATGTAATGTT TTCTGAATCT CTAAAAGGAA TT 
Length1522
Protein Sequence
Protein Residue
Map Locationscaffold_4: 21176334.. 21178486
Download Sequence
A.thaliana
AGI-codeAT2G45890.1
DescriptionRHO guanyl-nucleotide exchange factor 4
TAIR curator summaryEncodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Alias[ATROPGEF4][GEF4][RHS11][ROPGEF4][RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4][guanine exchange factor 4][ROOT HAIR SPECIFIC 11][ROP (rho of plants) guanine nucleotide exchange factor 4]
Gene coexpression
MR
MR Locus Description
3.16228 Ahg942558
3.31662 Ahg934180
5.47723 Ahg924708
6.32456 Ahg895409 RELA/SPOT homolog 1
7.74597 Ahg952059 Cytochrome b561/ferric reductase transmembrane with DOMON related domain
10 Ahg940470
10.247 Ahg894810
10.247 Ahg894808
16.0624 Ahg344504
17.8885 Ahg907311
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression