Detail



ID : Ahg894828

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|894828|Al_scaffold_0006_2824
Sequence
GAGGATCAAG AAACAGCAGT TCGTCTAGCG AACACAATGA AAAATTCGTT GAAGGAAAGA CCAGTGCAGA TCTGGAAAAT GGATCTTGAG GCTAGAAGTT TGCAGCCAAG TGCTAAAGTT ATGGAATCCA GAGTGGCGGA GGTATCTGCT GATCAAAGAG GAAGATTGGC AATGTCAGTG AAGAGGCTTG ACCAATCAAA AGACAGAGTC AGGGAGATTA GAAGACTAAT GCTGGAGACA GAAGAGGTTG GCATCTCAGT TTTCCAAGAT CTGAATCAGC AATGCCAAAC CCTTCTTCAT GTGCACACCA AGGTTGTGAA AATTGATGGG TGTGTGATTG GTGACGGAAA AGTTGGGCGG GTAACAAGAA CACTGCAAAA CGCTTACAAG AAAAGACAGA GGATTCTG 
Length408
Protein Sequence
Protein Residue
Map Locationscaffold_6: 13415380.. 13423083
Download Sequence
A.thaliana
AGI-codeAT1G26670.1
DescriptionVesicle transport v-SNARE family protein
TAIR curator summarymember of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.
Alias[ATVTI12][VTI12][VTI1B][VESICAL TRANSPORT V-SNARE 12]
Gene coexpression
MR
MR Locus Description
3 Virus1103
8.83176 Ahg892266
13.5647 Ahg928004 Cysteine-rich protein
13.8564 Ahg477685 F-box associated ubiquitination effector family protein
15 Ahg890836 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
15.0997 Ahg914248
16.0935 Ahg471521 Defensin-like (DEFL) family protein
22.5832 Ahg932946
22.6936 Ahg942680 Putative membrane lipoprotein
24.8193 Ahg489084 transposable element gene
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression