Detail



ID : Ahg894873

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|894873|Al_scaffold_0006_2869
Sequence
ATGAGGGAAT TAGGTTGTTG GCAACAATTA TCCAAAACCG GAGGGAGTAG GCGGGAACAC TGTGAACCGC ATCGCCGTCG AATGGGCCAA TCCACTTCCA CATTCCGGCG ATCTAAAGCT AGCTTCACTT CTCCGGTACT ACCTAATGAA GGCGAACATA ACTCCGGTGG CGATGAGCCG TACGATTGTA CTTCTAACTT ACCAGACGAA TGTTTATCGT TGATTTTCCA ATCGCTAACT TGCGCCGACC GGAAACGTTG CTCACTTGTA TGTCGTCGCT GGTTAACGAT TGAAGGACAG TGTCGTCATC GTCTTTCTCT CAAAGCTCAG TCAGATCTTA TCTCAGTCAT ACCTTCTCTC TTTTCTCGGT TTGATTCTGT TACTAAGCTT GTTCTTAGAA GTGACCGTAG ATCTCTTGGT ATTTGTGATA ACGCATTCGT TATGATTTCG GCTAGATGTC GGAATCTGAC GCGGTTGAAG CTGCGCGGTT GCCGCGAGAT CTCAGATAAA GGGATGGTTG CTTTCTCTGG GAATTGTAGG AGTTTGAAGA AAGTATCATT TGGATCTTGT GGGTTTGGGG TTAAAGGAGT GAATGCTTTG TTGAATAATT GTTTAGGTCT AGAGGAATTG TCGGTGAAAC GGTTACGCGG AATTAATAAT GTAGCTGGTG CTGGTGTTGA GCTTATAGGC CCGGGAGCAG CTGCGGGTTC GTTGAAGATG ATTTGCTTAA AGGAGCTGCA TAATGGTCAG TGTTTTGCTC CGTTGTTAAG CGGAGCTAAA GGTCTTAGGA CTTTGAAGAT TTTCAGATGT TCAGGGGATT GGGATCGGGT TTTTCAGGAG GTAGGTAATC AGGTTAATGC TATTGTTGAG ATACATTTAG AGAGGATTCA GATGAGTGAT TTGGGTCTAA CTGCGTTATC GAAATGTTCG GGTGTTGAGG TTCTGCACCT TGTGAAAACT CCTGACTGCA CGAATGTTGG TCTGGCTTTG GTGGCTGAAC GTTGTAAACT TCTAAGAAAG CTTCACATTG ATGGATGGAA GACAAATCGA ATTGGCGATG AAGGGCTTAT AGTAGTTGCT AAGTCCTGTT GGAATTTGCA GGAGTTGGTT TTGATTGGTG TGAACCCTAC AAAGTTAAGT TTGGAAGCAA TTGTCTCAAA TTGTCTTAAC TTGGAGCGAT TGGCATTGTG TGGAAGTGAT ACTGTAGGTG ACACCGAGCT ATGTTGTATT GCTGAAAAAT GTTTGGCATT GAGGAAGCTT TGCATCAAGA ACTGCCCCAT TACTGATGAT GGAATCAAAG CTCTTGGGAC CGGATGCCCG AATCTGCTAA AAGTGAAGGT TAAGAAGTGT AGAGGAGTAA CCACCGAAGG AGCTGATCTG TTAAGGACAA GAAGGGCGTT GCTTGTTGTC AATTTAGATA CTCCCGAGAC ACCAATTGCC GAGGTCAATG AAGGTGGAGC ACAGGCGGAT GCAGTTGAGT TCCCTCCATC CAGACTCCAA ATACCAACCC TAGGCATTGC ATCTGGTAGC ACCAGCCGGT CAACCTCGTT TAAGTCACGA TTAGGTTTTA CGAGTCGGGG AAACTTAGTT GTTTGTGCAC TGAGAAGGTT GGGAAGTCGT AGCAGGTCCC GGAATGATTA G 
Length1641
Protein Sequence
Protein Residue
Map Locationscaffold_6: 16638982.. 16640931
Download Sequence
A.thaliana
AGI-codeAT4G07400.1
DescriptionVIER F-box proteine 3
TAIR curator summaryEncodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2,and 4. When levels of all 4 genes are reduced plants show defects in growth and reduced levels of auxin response genes.
Alias[VFB3][VIER F-box proteine 3]
Gene coexpression
MR
MR Locus Description
46.8295 Ahg930508 dehydratase family
64.6993 Ahg945085 O-Glycosyl hydrolases family 17 protein
74.1552 Ahg470918 syntaxin of plants 111
84.0536 Ahg477875
99.373 Ahg941526 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression