Detail



ID : Ahg895208

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|895208|Al_scaffold_0006_3204
Sequence
ATGTCGGTCT ACAAGAATAT TAACGACATT CCCCAACCTC GGGATTTGAT GATCATGGTT GATCATAAGA GCAACGCTGT ATTATTACCA ATATACGGCA TCATGGTTCC ATTCAACGTG ACTACAATAA GAACAGTCTT AGGCAATCAA AATACCATCC GTATCATTTT CAATGTCCCG GGTACACCCT TCAACCCTCA TGACTCCAAC TCCTTGAAAA ATCAGGACGC TATTTACATC AAGGAGGTTT CCTTCCGGAC CAAGGATTCA AAGCATAGCA GCCAAGTAGT TCAGTCGTTT AAGACCCTCA AACGGAAAGT CATGTCCCTG GAGTCAGAGA GAGCGGAAAG AACGTCATTG GTGACTCAAG AGAAACTTAA GATTGCAAGT AACAAGTCCA AACCCTTAAG GTTGTTGAAC CTGTGGATCC GTCCGCCTTT TAGTGGGCGC AAGAAGATTC GTGGGACACT GGAAGCTCAT GCCAATGGTT TCAGGTATTC AACGGCCAAC GACCGCGTGG ATGTCTTGTT TGCAAACATA AAGCATGCGT TTGTCCAACC GGCTGAGAAA GAGATGACCA CCCTTCTTCA TTTTCATTTG CACAACCACA TCATGGTAGG AACCAAGAAG ACAAAGGACG TCCAATTCTA TGTGGAGGTA AGGGATGTTG TGCAGTCTTT AGGTAGTGGG AGGAGATCAT CAGCCTATGA TCTAGATGAG ATAGATGAAG AACAGCGAGA GCGAGATAGG AAGAACAAGA TCAACATGGA GTTCAATCAT TTTGCAAACC GGGTCAACGA TATATGGAAA CTACCCCAGT TTGCAAGTCT GGACCTAGAG TTTGATCAAC CTCTGAGAGA GCTTGGTTTC CATGGTGTTC CGCATAAGAC ATCTGCATTC ATTATACCGA CCTCTAGCTG CTTAGTTGAG CTGATAGAAC ACCCGTTCCT CGTGGTAAGT CTGAGTGAGA TTGAGATAGT GAATCTTGAA AGAGTTGGGT TTGGGCAGAG GAGCTTTGAC ATGGTTATCA TATTCAAGGA CTTCAAAAAA GATGTTTATA GGATTGACTC AGTTCCCACA AGTTCACTAG AGGGGATAAA GGAGTGGCTT GACACTATAG ATATAAAGTA CTACGAGAGC AAACTGAATC TGAACTGGAG ACAGATCCTG AAGACAATCA CTGATGATCC ACAGAGCTTT ATAGATGATG GAGGGTGGGA GTTTTTGAAC CTGAACGGAA GCGATTCAGA ATCTGGCGGC TCTGAGGAGT CAGACAAAGG ATATGAACCA TCAGATGTAG AGGCTGAGTC TGAGTCAGAG GATGAGGATT CAGAGAGTGA GTCAATGATG GAGTCAGAGG ATGAAGAAGA AGAGGACTCA GAGCAAGAGT CAGAGGAAGA GAAAGGTAAG ACTTGGGATG AACTTGAGAG AGAAGCTACT AATGCAGACA GAGAGCATGG AGTTGAGTCT GATAGCGAGG AAGAGAGGAA GAGAAGGAAG ATGAAAGCGT TTGGGAAATC GCGACCTGGA AGTAGTGGTG GAGGCGGTAG TAGCAGCATG AAGAACATGC CACCATCTAA ACGCAGCAAG CACAGGTGA 
Length1599
Protein Sequence
Protein Residue
Map Locationscaffold_6: 19394080.. 19396097
Download Sequence
A.thaliana
AGI-codeAT4G10710.1
Descriptionglobal transcription factor C
TAIR curator summaryencodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.
Alias[SPT16][global transcription factor C]
Gene coexpression
MR
MR Locus Description
30.1164 Ahg947025 Galactose oxidase/kelch repeat superfamily protein
46.7333 Ahg915045 high affinity K+ transporter 5
58.8897 Ahg896008 pectin methylesterase 38
71.4143 Ahg342636 AP2/B3-like transcriptional factor family protein
95.0263 Ahg927040
99.1464 Ahg921700 ENTH/VHS/GAT family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression