| Annotation |
|---|
| Description | jgi|Araly1|897537|Al_scaffold_0005_1503 |
| Sequence |
ATGTCTTCAA AAGTGGCTTC TGGGATAGAA CAGCTGCTGG GACAGCGTAT CGCAGCGGAT GTTAGGATGT CTTATGAAGG TGGTGGTGAT GGAGGTACAG CTGGTGCTGA TGATGTTGGT GGAAGTGGAA GTAGCCGTCG TAAGATGCCG AAAGAAATCG GACGAGACCG GATTTGTGAA AAGTTTTTGG AAACAACTGG TATAAGTCTT CCTTGGGATT CTTTCAAGAG CAAATACGAC ACCTTGAGAA ATAAGTGGAC TTCTTATAAG ATTCATAATA ATCCGGTACA TTGTATGAAC ATGTTAAGGA TGCATCCAGA AGCATTCAAG AACCTATGCA CAACACTGGA GCAACGTTAC AACTTATGTA GTACTGATCA TATCAGTATT GATGAGATGG TGGCTATATT TCTCGTTACA TGCTCCCAGA ATGATACTCA AAGGTATGTT GGGTTGTCTT TTGGTCGTTC CCAAGAAACT ATCTATCGAA AGTTTCATGC TGTATTGGAT GCAGTGGAGA GTCTTGCATG TGAGTATTTA AAAACTCCAA CACCGGCATC ACTCAAGCAT TATCCACGTA AGTTACAAGA AGATTCAAGA TATTGGCCTT TTTTCAGCGG ATTTGTTGGA GACCTTGATG GAACGCATGT CAAGGTAATG GTCGGAGGTA GTGATGCAGT TGGGTATTGG GATAGGCATG GACAAACAAG CCTAAATATA GTGGCCATAT GCGATTTAAA CATGATCTTC AAGTATGCAT GGCTAGGCGC AGCTGGTTCC ACACATGATT CATTGGTGTT ACAGTACGCA ATGGATGGAG ATCCTATATT TCCCAAACCT CCTATAGATA AAGAACTTAA TCGACTCGAG GAAGAAGAGG CAACAACTGA TGGCCAATAT ATGAATAACA TACGAGATGA GATTGCAAAT ATGTTATGGA ATTTTTTACC ACATAATTTT TACAATCTCC AATCACCTAA CCTCCTTCTC CTCCATTCCC CGACAGTGGC GGCGCACAAT CATCTCCACC TCCAGGCTCC AACACCTCCT TCTTCCCCTC CACCTTCTGT AACTCCACCT CCTCCGCCTA AAGTTGACTT GGGAAACTTA GATGAAGAAG AGGAGGCAGA GATTCAGTGG TTAGCAGCCA ACAGAGACAA GTTAGAGCAG CAAGTGTTAT ATGAAGCTTC ATGGGTAGTC AACAGGAAGA ATCTGAGCTG GCAGTGA |
| Length | 1227 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 12333223.. 12337759 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G23780.1 |
| Description | nuclear RNA polymerase D2A |
| TAIR curator summary | This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin. |
| Alias | [DMS2][DRD2][NRPD2][NRPD2A][NRPE2][OCP1][DEFECTIVE IN MERISTEM SILENCING 2][nuclear RNA polymerase D2A][OVEREXPRESSOR OF CATIONIC PEROXIDASE 1] |
| Gene coexpression |
|---|
| MR |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|