Detail


ID : Ahg899566

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|899566|Al_scaffold_0004_216
Sequence
ATGGAAATGG GTGTTATGGA GAATTCGATG GTGCATACGG AGACATCAAA GGTTAAGTCG TTGAGTAATG GTGAGGTTTT AGTGGAGAAA CGAGGAGTGT CAGTTTTGGA GAATGGTGGT GTTTGCAAGC TTGATCGAAT GACGGGGCTT AAGTTTAAGC GCCGGAAGGT TTTTGCTGTG AGGGATTTTC CGCCGGGGTG CGGGACCCGT GTGGAGCGGT TTGGGTCGAT GGAAGTGAAG AGTGCTTGTG AGAATGGGAA TGTTGCTGAA GATGTTAAGG TTGTTGAGTC TTTAGTTAAA GAGGAGAGAG ATGGTGGTGT GGATGTATCA GGTGGAGAAC TGGAAGCGGA GAATGGGAGT GATGTTAGTA TGGCTGAGGC GGTGGAGGTT CAGCCGTTGA GCATTTGTTT GCCAGAAGGG GATGTGGAGA GAAATGTTGA ACAGACTGTG GAGGTTGCTG GGTCGATGGG ACAGAGCTTG GTTCTTGAGG ATTCGGGTTC TGGTGCTAGC AGCAGCGGAA CAACTGAAAA CATGGTGAGG GATGTCGTTG TTTATGCAGA TGAGAGCAGT CTGGGAATAG ATGATTTGGA TTATACTGAG CCGTTGGAAA TTGAGATGTC AGATGTTTCT GTTGCAAAAC CGAGTCTTGT TGCGGGTAGA AGAAAGGCAA AGAAAGGAAT TGCATTTCAT TCATCCTTGA AGCTTACCAA AAAGAACAAC CGAGAGTATG GTGAAGGATC TAGTAAGAGG AACAGTAAGA GCAATATATA TTGGCTTTAT AGGGAAAGTC TGGATTTTCC TCATCAGGAA ACATCTCGGG AGCTTCGGAT ACTAGATGTT GGTTCAAGCA GTGGTGATGA TAGTATTCGG AACAAAGTTA AGGAAACTCT GCGTCTTTTC CATGGCGTGT GCAAAAGGAT TTTGCAGGAG GATGAAGCAA AGCCTGAGGA CCAAAGGAGA AAAGGTAAAG GTCTTAGAAT AGATTTTGAC GCTTCGAAGA TTCTCAAAAG GAATGGGAAA TATCTCAATT CTGGTACACA GATTTTGGGA CATGTACCTG GAGTTGAGGT TGGTGATGAG TTCCTATATA GGATGGAGCT GAACATTCTT GGTGTACACA GACCAAGCCA AGCCGGTATC GATTATATGA AATATGGTAA GGGCATAGTT GCGACAAGTA TTGTAGCCTC TGGAGGGTAT GACGACCATC TGGATAACTC GGATGTCTTG ACCTACACTG GTCAAGGCGG AAATGTGATG CAAGTAAAGA AGAAGGGCAA GGAACTGAAA GAGCCCGAAG ACCAAAAGCT TATATCAGGA AACCTCGCGT TAGCAACCAG CTTAAAGAAG AAGACACCTG TGCGTGTCAT TAGAGGCAAA CATAAGTCAA CTTTAAAAAC ATCATCTGGT GGAAATTATG TCTACGACGG TTTGTATCTT GTGAAAGATT ATTGGCAAGA AGTCGGATCT CACGGGATGT ATGTCTTCAA GTTTCAACTT AGGCGCATAC CTGGACAATC TGAACTTTCA TGGATAGAGG TGAAGAAATC TAAGTCAAAA TACCGGGAAG GTATATGCAA GCTTGACATC TCAGAAGGGA AAGAGCTGTC ACCCATTAGC GCTGTGAATG AAATAGATGA CGAGAAACCG CCTTTGTTCA CCTACACAGT TAAAATGATT TACCCAGATT GGTGCAGACC AGTTCCTCCA AAGTCATGCG GTTGCACCAC ACGCTGCACA GAAGCCAGGA AGTGCGCGTG TGTGGTGAAA AACGACGGAG AGATACCGTA CAACTACGAT GGAGCCATTG TTGGGGCTAA GCTTTTTATC TATGAATGTG GCCCGCTCTG CAAATGCCCT TCTAGTTGCT ACCTAAGAGT CACACAGCAC GGGATCAAGT TACCGCTTGA GATCTTCAAA ACCAAGTCAA GAGGTTGGGG AGTGAGATCG CTTAAATCGA TCCCTATTGG TAGTTTCATA TGCGAATACG TTGGTGAACT CTTAGATGAT AGCGAAGCAG AAAGAAGAAT CGGGAACGAC GAGTATCTCT TTGATATTGG TAACAGATAT GATAACTCTT TAGCGCAAGG GATGTCAGAG CTAATGCCAG GGACACAGGC AGGCCGAGCT ATGGCAGAAG GTGATGAGGC GGGTGGATTC ACCATTGATG CAGCAAAGAA GGGGAATATT GGGAGGTTCA TAAACCATAG CTGCTCGCCA AATCTGTATG CACAAAACGT ATTGTATGAT CATGAAGACA AGAGAATCCC TCACGTGATG TTCTTTGCAC AGGACAATAT ACCTCCGCTT CAAGAACTCT GTTACGACTA CAATTATGCG CTCGATCAGG TACGCGACTC TAAGGGTAAT ATCAAGAAGA AACCTTGCCT TTGTGGTGCT CCCGGATGTA GGCATAGGCT CTATTGA
Length2427
Protein Sequence
Protein Residue
Map Locationscaffold_4: 1079022.. 1081472
Download Sequence
A.thaliana
AGI-codeAT2G22740.2
DescriptionSU(VAR)3-9 homolog 6
TAIR curator summaryEncodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.
Alias[SDG23][SUVH6][SET DOMAIN PROTEIN 23][SU(VAR)3-9 homolog 6]
Gene coexpression
MR
MR Locus Description
42.638 Ahg489175
43.6921 Ahg323966
56.6039 Ahg496790 Tetratricopeptide repeat (TPR)-like superfamily protein
67.0373 Ahg351609 Protein of Unknown Function (DUF239)
80.9074 Ahg351608 Protein of Unknown Function (DUF239)
81.6823 Ahg475241 U2 snRNP auxilliary factor, large subunit, splicing factor
82.5954 Ahg491329 Wound-responsive family protein
88.0682 Ahg485847 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
94.4669 Ahg316947 Pectin lyase-like superfamily protein
95.247 Ahg480275
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression