Detail



ID : Ahg901363

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|901363|Al_scaffold_0004_2013
Sequence
ATGTCTTCTT CGAGTTATAC AGGTGGAAAA TGCACACAGC AGGCAGAACT TAGTGGAGAG AATATAAATA TCACCTACAA ACCTGACGGG ACACATGTAG CTGTTGGTAA TAGGGTTAAT GAGATTGATT GGAACATGCC TGGTGATTTT TTCTTCTTGA ATACTGGAGT TGGTGAGGAT TTGAAATTAT GTACTTTCCT ACACACGATT CCCTAG 
Length216
Protein Sequence
Protein Residue
Map Locationscaffold_8: 16306349.. 16306952
Download Sequence
A.thaliana
AGI-codeAT5G56130.1
DescriptionTransducin/WD40 repeat-like superfamily protein
TAIR curator summaryEncodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Alias[AtTEX1][TEX1][THO3]
Gene coexpression
MR
MR Locus Description
22.0454 Ahg952219 peptide-N-glycanase 1
46.9042 Ahg947872
52.3927 Ahg334927 myb domain protein 58
57.4804 Ahg935251 Ypt/Rab-GAP domain of gyp1p superfamily protein
64.4826 Ahg941716
64.4826 Ahg930485
66.2571 Ahg947666
98.3667 Virus1061
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression