Detail



ID : Ahg904299

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|904299|Al_scaffold_0003_1427
Sequence
ATGGCGTCGC AGTTGCATAC CAGTAAGGTG CAAGGCAATA GTGTCCCGAA TCCCAACACA GTCGCTTCGA TTCTCTATAG TCCTGAGAAA GCAGGAGCTT TCAATTGCGA GTACATATAC GAAATCGGCC AAAAAGGTCT CGGCGTTCTT CAACAAGAAG ATTCTAGGTT TAATAATTTC ATCATCGGCA AGAAGCGTCG TGGAATCAAC GATGTGAAGT TTAGCTATAA CGTTTGGGAT CTGTTTCGTT ATAAAGAAGA AATCAATCGG GATTCGCTGG GTAAGGAGGA ATTGGATCAG ATTAAAGCAT CAATCAGGTC TTATCTGCGT TTGCTCTCCG ATTATATGCA GTTTCCTGCT GCCTTGGATA CTCTGGAGTA TCTTCTGCGA ATGTACAAGA TCCACATATA CGATTGGCAG GATTTGATTT TCTGTTCGTT GCCTTACTGT CATAAACCTG AATTTACCCG TATTCTTCAG CTGGTTTGTC CGAATGGCAA TAGCAAATGG GACTTACTTC TTGATCTTGT CAAAGACTCA GATGCTCCCG TCCCTAGAGA GGTTTTCATT AAAAGCCTAT GTGATATACA GATTGTAAAC AGCTTGTGTG AAAATGCATG TGAGACTCGG ACTAAGAAGT CTGAACTTTC AAAAAGCGTA TTCATGTTCA CCACGGCTAT TATTTTAGGA GTACGCACAA AGCTTACAAC AATTGATGAA GTAAAGCCAG TTGTGTTCTT TATAGATCAA GCTATCAGTT CCGGTGGATC ATACACAACT TGTGCTTTGA TGATCATCTG TCAGCTATCC AAGAAAACTT TACAACATTC GAATTTCTTG ACTTGGATAG TCAAGACTAG CCAAGGCAGC CAAGATTATA ACTGGCTTCG GTTATCCGTC ATTACTTTGA TCAATTTCGT TCAGCTGCAA TCTGTGACCT CTATCCGTAA GAGTATCTTG GCCGATTTGA TAAAAATAGA ATATCTCGCA CCAAAAGAAG ATGAAACAGA AGATGAGAAA AAGGATAAAA AAAAGAAAGA TAAAAAACAA CCTTTTGCTA AGGTTCTTTT GGGCATCTCG GAGGAGTTCA ACATCAGCAG ATTTTTGGAT ATTCTACTAG ATTCTTGTCT CCCTCACTAT GACACGTATG AGGATCGCTT TTCTCAAACG ATAGCCTCGA TCATTGATAC TGTTCCAATG AATATTAATA TGGTTGATCT GACATCCAAA GTGCTCTCTC AGTGTATGAT ACTGTCAGGG GAGTGGGCGA GGACAATTCT GCTTGCCATT TATAACAAGT ATCCTGATGA ACTATTGGAA GCAGTTGAAA ATTTTCTGGA TAATGAAATT CAGACAGAGT TGAAACTCGA TATGCTGTCT CAGATGATGG ATTTCTGCGA ACTAGACAAG GTTGCTTTAG GTCTTGCCTT CAAGAAAACG CTACTCAAGT GTGTAAAAGA AAAAGCTCAG AAACTTAGGA CTGAAAAGGC GCTCAGCGGC TCTTCTTCTC AAAACAGGAG AGAGCTGAAT GCTGATGATA TAACTATCGA ATTATTTGGG AAGATGTGTG AAGAACTTAT TCAAGCATTG ACCGAGCAAT ATCTTTATCC ACAGGCGCTA CTAGGACCTA TTCTCTCACA AGCCGTCGTT AAACCGCCAT CTTCACTTAA AGAGCACCCA CATGTACCCA CGGTAGAAAA GGTGGATGAG TGGTTGGTTT CTTGCATCAC TCAGATGGCA ACCTCTTACT CTGACCTTGC GCTTAAACAC GAGGTGCCAA AGGAAGCGAG GAGTAAGGGT TTACGTGAAA AGAAATTGGA AAAAGAAGAA GAAGAAGAAA ATAAAATGTT GAAAGTCGTA GACAAGATTT TAGGGTTGGT GTCCGCAATT CAGAGAGATG GAGAGAATTT TAAGGTGTGG AGTCTAAGAG CGACGCCATT GAATTATTTA TTCCGTATCT CTTCTTCTAC GCGTTTCGCC ACCGCGATAT ATGGAAGAAG ATCCTACCAC TCATCACTCG CTCATCACAG CTGGCTGACA CATTTGCAGC TCTACTGGGA GCTTTCTATA TGTGTGAATT CTTTTTCAAT TCTCATCAAA TCTCTCCTTC CACTGCCAGA CAGATATCAT GGCCTAACTG ATATTGATAA AATGTTACCG CCAACGGTGA GCTCTGTCTT CTGTCTATGT AAATCTGTGT TCCTAATTCT TAAAGGAAGC CCATACATAA GTTTCATTTG GGTTCCAATT ACTGTGTTTC TTACTAGATA TGTTGATATG ATTGCTAATC CTGTAGTGGC TGATGTGTTC CGGAGAAGGG CAAAAGTAGA TTGTTTCCCT AGATACGCAA GACAGTTGAG TCTTTTGGAT ATTTGGAGGT TGAAACTCCA CTTCTTCAGA AACAAAGGCA TTTCAACACA TCACAATCCT GAATTCACGA CCATAGTGGT ACTTCAAGAT ATACCTTCTC CTCAATCTTC TGCATCTCCT GTCCTGGCTT TCACAATCTT GAATGGTTCC ATAGCAGTTT TAGCTTTGTT TAGATGTATG AAGCTTATTC CGACTACCCA AGCATGA 
Length2577
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT3G13490.1
DescriptionLysyl-tRNA synthetase, class II
TAIR curator summaryEncodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.
Alias[ATKRS-2][OVA5][ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2][OVULE ABORTION 5]
Gene coexpression
MR
MR Locus Description
26.9258 Ahg939193
34.6987 Ahg897440
34.8138 Ahg897107
45.9021 Ahg489156 tetraspanin12
69 Ahg928535
74.5386 Ahg312395 Remorin family protein
78.0385 Ahg342684
82.5227 Ahg356074 expansin A24
96 Ahg481189
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression