| Annotation |
|---|
| Description | jgi|Araly1|918952|scaffold_100233.1 |
| Sequence |
GTAAACGTAG AAGAAAATTG AATGGCTGTG GCTACAGCTC CGTCGCTAAA CCGCCATTTC CTCTGCCGCG TCTCGAACCC TTACTCGAGA GTTAAGCAAC GACGGCCATG GCTGCCACAA GGAAACGCTA CCCTTTTCCA CTCTCACCGG AATTGGGATT CCCATCTCCT TTTTTTCGCT TCCTCTTCTT CTTCTCCTTC GTCGTCGCCT TCGCCTCCAA ATTCGCCGAC GGATGATCTC ACGGCAGAGT CGTGCGTCAA TACTGGTCTT GATCTCTTTA AGAGAGGACG GGTCAAAGAT GCTCTTGTTC AGTTTGAAAC TGCGCTGAGT TTGGATCCAA ATCCTATTGA GTCACAAGCA GCTTACTATA ACAAAGCATG TTGTCATGCT TACCGGGGCG AAGGAAAAAA GGCTGCTGAT TGCTTGCGAA TTGCGTTAAG AGATTATAAT CTGAAGTTTG CCACTATTCT TAATGATCCT GATTTAGCAT CCTTTCGCGC ATTACCCGAG TTTAAGGAGC TGCAAGAAGA GGCTAGGTTA GGCGGGGAAG ATATTGGCGA TAGTTTCCGG AGAGATCTGA AACTTATCAG TGAAGTACGA GCACCGTTTC GTGGCTTTAG AAAATTCTTT TATTTTGCAT TTGCAGCAGC AGCGGGTATC TCAACATTCT TTACTGTACC AAGACTGATT CAGGCAATCA GAGGCGGTGA TGGTGCTCCA GATCTTCTGG AAACGACGGG AAATGCTGCA ATTAACATTG GAGGTATTGT TGTTCTGGTT TCACTGTTCC TTTGGGAAAA CAAGAAAGAG GAAGAACAAA TGGTACAAAT AACTCGAGAC GAAACTCTCT CCCGGTTGCC TCTACGCCTG TCAACCAACC GTGTTGTTGA ACTTGTGCAG CTAAGGGATA CAGTTCGACC CGTTATTCTA GCTGGGAAAA AAGAGACTGT TACACTCGCG ATGCAAAAAG CAGATCGGTT CAGAACCGAG CTCCTAAGAC GAGGTGTTCT CTTAGTTCCT GTGGTATGGG GTGAACGTAA AACACCGGAA ATCGAGAAAA AAGGTTTTGG AGCTTCTTCA AAGGCAGCTA CATCTCTTCC TTCAATTGGG GAAGATTTCG ATACACGGGC TCAATCGGTA GTAGCCCAAT CGAAGCTGAA AGGTGAAATC AGGTTCAAGG CTGAGACTGT TTCGCCTGGT GAATGGGAAA GGTGGATAAG AGATCAACAG ATATCTGAAG GAGTTAACCC GGGCGATGAC GTGTACATTA TACTGCGGTT AGATGGTCGA GTCCGCAGAT CGGGTAGAGG GATGCCGGAT TGGGCTGAGA TATCGAAGGA GTTGCCGACG ATGGATGACG TGCTCAGCAA GTTAGAAAGA TGAAACTGTG AAGCTTTCTT ACA |
| Length | 1403 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 756633.. 759066 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G02910.1 |
| Description | tetratricopeptide repeat (TPR)-containing protein |
| TAIR curator summary | Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. |
| Alias | [LPA1][LOW PSII ACCUMULATION1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.28011 |
Ahg495320 | Class II aaRS and biotin synthetases superfamily protein |
| 11.6619 |
Ahg941792 | Alanyl-tRNA synthetase, class IIc |
| 15.8745 |
Ahg924574 | Peptidase M1 family protein |
| 21.0238 |
Ahg485358 | casein kinase II, alpha chain 2 |
| 22.1359 |
Ahg899624 | natural resistance-associated macrophage protein 3 |
| 22.3607 |
Ahg944585 | histone deacetylase 14 |
| 22.4499 |
Ahg494737 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| 24.1661 |
Ahg476802 | Photosystem II reaction center PsbP family protein |
| 24.8193 |
Ahg316308 | Protein of unknown function (DUF1295) |
| 25.2389 |
Ahg489600 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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