| Annotation |
|---|
| Description | jgi|Araly1|921535|scaffold_102816.1 |
| Sequence |
CTCGCTCGAA AAGTTGCTGA GATGAGGAAT TACAGAGACC CCATGACTGA TGAAGACGAA GATTATCCAC TTAAGTTAAC TAAGAAGCAG ATAAATACCA CAAGAAGAAA GGCAAAGGCT TTAGCTTTTA AGCAGAAATT CTTGTTGATG CTAGTGATCT TAGCTTTAGA GACTCGCTTA CTTAATTTTA AGCTGGATAA GTTTTACAGA AGTCTGAGAG ATGTTTGTTT GACTGCTATT TATAGTTACC CGCGTATAGC AGAAGAAACT ATTGCCAAGA AATGTCCATT CTGCTGTAAT ACTTGCAATT GCAGCCGATG CTTGGGCATG AATACTACAT TAGATGGGAT AAATGATGAA CAAACTGCTG AGAAGGAAAT TGAGGAGGCA AAGATTTTAG GGATGGAGTT TGAAGAGGTG AAGCCCCAAG CCACTAATTG TTTACCTGAT GAAAGACTAC ACTGCGACAT TTGCAAGACC CCAATCTTTG ATATTCATAG GAGTTGCTCT AGCTGTTCAT CTGATATTAG TCTTACTTGT TGCCTCGAGA TCCGTAATGG AAAGCTTCAG GCATGTCAAG AGGATGTGTC TTGGAATTAT TATATTAACA GAGGTTTAGA GTATGCACAT GGAGAAAAAG GAAAGGTTAT TGAAATGACA AATGATAAGC CGAGTAATGA AGACCGTGTG AAGCTCCCAT CTATGTGGAA ACTTTTGGAT TTACCTGAAA CGGTTATGGA GCGATGCCCT TGTTTTAACT CTCATGGTCA TATTGATAAA GCCAACAATA AAAGGTTAAA GGCTGCTTGT CGAGAAGGTT CAGAAGACAA TTATCTATAT TGTCCAAGTG TAAGAGATGT TCAAAAAGAT GATTTGAAGC ATTTTCAGCA TCACTGGGTA AAAGGTGAGC CTGTGGTTGT GAGGAATGCG CTCGAAGTTA CACCTGGTTT AAAATTAGTG GTTGGTTGGA AAGAAACTGC TGAAAACCTC ACAAGAATAC AAAATGGCAC ATCTAATGAC ATATATTTGG TGCAGGGAAC AATTCATCCT CGCGAGTTCT TTACTGGTTA TACAGAAGGC CGTTATGATT GCAAGGATTG GCCACAAGTT CTGACACTGA AAGATCAGCT TCTTTCTAAG TCCTTCAAAG ATAACTCGCC ACGCCATTGG GAGGAGTTCT TATGCAGTTT GCCTTTGAAG CAGTATACTC ACCCAGGTTA TGGACCTTTG AATCTCGCTG TGAAATTTCC CGAAAGTTGC TTGGAGCCGG ACATGGGGCC AAATACTCAC CCAGGTTATG GACCTTATGG ATTTGCTGAA GAATTTGGTC GTGGAGATTC TGTCACTAAG CTCCACTGCG ACTTCTCTGT TGTGCCGACA ACGATGAAAC TGAATTCATT TTGCCGTTGC TGGGAGCTGT TTTGTTCAGA AGCTAACAAT GAGGTTCTTG AACAAACTAG TGAAGAAGTG GAATATATTG AAACTGATGA AGGGGCTCTT TGGGACATTT TCCGTAGAAA AGATGTTCCA AAATTAGAAA AGTACCTCGA GAAACATCAC AAGGAGTTCA GACATATGTA CTGTTGCCCC GTAACTCAGT CTTGCATAAA GGTAGGGCAT GACTTTGTCT CACCTGAAAA TGTCGGCAAG TGTTTACGCT TATCAAATGA ATATCGTCTA CTTCCACCAA ACCATGATTC AAAAGATGAC AAGTTTGAGA TAAAGAAGAT CATAGTGTTT GCAATGGACC ATGCTCTCAA ATACTTAAAT CAAAGTTAAA AGGAGTGTGT TTGTACTTCC T |
| Length | 1801 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 10443296.. 10447526 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT3G07610.3 |
| Description | Transcription factor jumonji (jmjC) domain-containing protein |
| TAIR curator summary | IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. |
| Alias | [IBM1][increase in bonsai methylation 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 31.7962 |
Ahg903362 | |
| 69.685 |
Ahg473796 | F-box family protein with a domain of unknown function (DUF295) |
| 83.0301 |
Ahg494418 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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