| Annotation |
|---|
| Description | jgi|Araly1|924712|scaffold_200273.1 |
| Sequence |
TCACACAGAG AGCAAGAGGC ATGTCAACAG AGACTAAAGA AACCCGACCC GAAGACCCGG AAACCCATTC TAATTTGGAT TTACCCGGTG AAGAACCTCT CGGAAAGCTT ATCGCTGACG ACGTGAACGA CGTCGTTTCT GATGCGTCGG CGACGGAGAC AGACTTCTCA CTCTCCCCGA GTCAATCGGA GCAAAATATT GAAGAAGACG GCCAAAACTC ACTCGATGAC CAATCGCCAT TAACGGAGCT TCAACCTCAG CCTCTTCCTC CTCCTCCTCC TATCGAAACA CGAATCTCAG AATCGCCCGG TGAAGAAGAA TCTTCCGATC TGGTAACGGA GCAACAATCA CAAAACCCTA ATGCGGCGGA GCCTGGTCCT AGGGTAAGAA AACGACGCCG TAGGAAGCGT TTCTTCACTG AGATTAACGC GAACCCAGCT TTCTCCAGAA ACCGCCGCAC TAGCGTCGGC AAAGAGGTGG ATTCAGAAGC GCTAATCGCA ATGTCGGTAG GGTTTCCGGT TTATTCGCTC ACGGAGGAAG AAATCGAAGC TAATGTGGTT TCGATCATCG GAGGTAAAGA TCAGGCTAAT TACATTGTCG TGAGGAATCA CATTATCGCT CTGTGGCGAT CTAATGTATC GAATTGGTTA ACGCGAGATC ATGCGCTTGA GTCTATACGT GCTGAACACA AAAACTTAGT GGATACAGCT TACAATTTCC TTCTTGAGCA TGGTTATATT AACTTCGGGC TTGCTCCGGT TATTAAAGAG GCGAAATTGA GGTCGTTTGA TGGCGTAGAG CCGCCTAATG TTGTGGTTGT TGGGGCGGGT TTAGCTGGTT TGGTGGCTGC TAGACAATTG TTGTCAATGG GGTTTAGGGT TTTGGTTCTT GAAGGTAGAG ATAGACCGGG TGGGCGGGTT AAGACTCGTA AGATGAAAGG TGGTGATGGT GTTGAGGCAA TGGCTGATGT TGGTGGAAGT GTTCTCACCG GTATTAATGG GAATCCGCTT GGGGTTTTGG CGAGGCAACT AGGTTTGCCT CTTCATAAGG TTAGAGATAT TTGTCCTTTG TATCTTCCCA GTGGAGAGCT TGTTGATGCT GGTGTTGATT CTAAGATTGA GGCATCGTTT AATAAGTTGT TGGACAGAGT TTGTAAGCTT AGACAGTCGA TGATAGAGGA GAATAAATCA GTAGATGTGC CTTTGGGAGA AGCGCTTGAA ACATTTCGAT TGGTTTATGG GGTTGCTGAG GATCAGCAAG AGAGAATGCT CTTAGATTGG CATTTAGCAA ACTTGGAATA TGCAAATGCT ACATTGTTGG GGAATCTGTC AATGGCGTAT TGGGATCAAG ATGATCCATA TGAGATGGGC GGTGACCATT GTTTTATCCC AGGTGGGAAC GAAATATTTG TACATGCGTT AGCGGAAAAT CTTCCGATTT TTTACGGGAA TACAGTTGAG AGCATCAGAT ATGGAAGCAA CGGGGTTCTT GTTTACGCAG GAGACAAAGA ATTCCACTGC GATATGGCTC TTTGCACGGT TCCGTTAGGT GTTCTGAAGA AAGGTGCGAT CGAGTTTTAT CCCGAGCTTC CTGAGAAGAA GAAAGAAGCG ATTCAGAGAC TCGGATATGG ATTGTTGAAC AAAGTGGCAA TGTTGTTTCC GTATAACTTC TGGGGCGAAG AGATTGATAC TTTTGGGCGA TTAACCGAAG ATTCGTCTAC TAGAGGAGAA TTCTTCTTGT TCTACAGCTA TTCTTCTGTT TCCGGTGGTC CATTACTTGT AGCACTTGTA GCTGGTGACG CTGCAGAAAG ATTTGAGTCA TTGTCGCCTA CTGATTCCGT TAAACGGGTC TTGCAGATAC TACGCGGAAT ATATCACCCG AAAGGAATTG TTGTTCCTGA TCCGGTTCAA GCACTCTGTT CCAGATGGGG CCAAGACAAG TTTTCATACG GTTCTTACTC ATATGTTGCG GTCGGATCAT CAGGAGATGA TTACGACATT TTAGCTGAGA GTGTCGGTGA CGGAAGAGTG TTCTTTGCAG GTGAAGCTAC TAACAGACAA TATCCAGCAA CAATGCACGG AGCCTTCTTA AGTGGAATGA GAGAAGCAGC AAACATACTT AGAGTTGCTA GAAGAAGAGC ATCATCTTCG GCTTCAAATC CTAACCAGAC CTGCATCGAC AAAGAAGAAG AGGTCGACGA AGAAGAAGAC AGCTGTTTGG ATCAGTTATT CGAGACACCC GATCTGTCAT TCGGGAATTT CTCGGTTTTG TTTACTCCAA ATTCGGATGA ACCTGAATCC ATGTCATTGT TGAGAGTTAG GATCCAAATG GAGAAACCTG AATCGGGTCT TTGGCTTTAC GGTTTAGTGA CAAGAAGGCA AGCTATTGAG CTTGGGGAAA TGGAGGGAGA TGAGTTGAGA AATGAATACT TGCGTGAGAA GTTAGGTTTT GTACTCGTCG AAAGGAAGAG TTTATCTCAA GAAGGAGAAT CGATGATCTC TTCACTCAAA GCTGCGAGAT TGAATCGACA GATCTTTGAT TAGTACTAAA ATAGATTTAG ATGG |
| Length | 2564 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 1367779.. 1370342 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G62830.1 |
| Description | LSD1-like 1 |
| TAIR curator summary | Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation. |
| Alias | [ATLSD1][ATSWP1][LDL1][LSD1][SWP1][ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE][LSD1-like 1][LYSINE-SPECIFIC HISTONE DEMETHYLASE] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.7238 |
Ahg485521 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| 13.2665 |
Ahg944131 | MRG family protein |
| 26 |
Ahg490504 | RNAhelicase-like 8 |
| 31.6228 |
Ahg492627 | SWIB complex BAF60b domain-containing protein |
| 32.187 |
Ahg481031 | Sec23/Sec24 protein transport family protein |
| 33.5708 |
Ahg480240 | Minichromosome maintenance (MCM2/3/5) family protein |
| 36.6197 |
Ahg488249 | SWIB/MDM2 domain superfamily protein |
| 41.4246 |
Ahg926218 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| 44.4297 |
Ahg472581 | |
| 45.2438 |
Ahg471648 | basic pentacysteine 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|