Detail



ID : Ahg925267

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|925267|scaffold_200828.1
Sequence
GCTTGCTTGA AATGTTACTT GAAGTGGATG GGTCAGAGAA ACCGCAGTTG TGGAACATGC CGCAGCGTAG TTCGTGAAAG CATGGCAAGC AATCCCCGTA TCACTTGTCC ATTGTGTCTC AATGAAGACC GTCCAGAGAA AGCATTTACA ACTGAGCGCG CTAAGAAACC AGGGAACGTA AATGCTTCCA GTCGTAGGAT TTTTGTTACA ATCCCACTTG ATCACTTTGG TCCTATACCA ACTGAAGATG ATTCTGTCAG GAACCAATGT CTTTTGGTTG GAGAATCCTG GAAGGGCCGA CTTGAATGTT GGCAGTGGAG GGCTCACTTC CCACCTGTTT GTGGCATTGC TGGACATGCT AGTTATGGAG CTCTTTGTGC TCTCCGGAGG TTATGAGGAT GACGAGGATC ATGGAG 
Length416
Protein Sequence
Protein Residue
Map Locationscaffold_2: 4589930.. 4590409
Download Sequence
A.thaliana
AGI-codeAT1G57800.1
Descriptionzinc finger (C3HC4-type RING finger) family protein
TAIR curator summarypredicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH3/VIM5 cDNA through RT-PCR were unsuccessful and only one Arabidopsis EST is associated with this locus.
Alias[ORTH3][VIM5][ORTHRUS 3][VARIANT IN METHYLATION 5]
Gene coexpression
MR
MR Locus Description
1 Ahg925199
8.7178 Ahg938721
10.3923 Ahg927748 Fatty acid hydroxylase superfamily protein
13.1149 Ahg947079
13.6382 Ahg938718
14.2478 Ahg933782
14.6969 Ahg918958
14.9666 Ahg478496 Uncharacterised protein family (UPF0497)
16.9115 Ahg922318
18.5742 Ahg932117 Protein of unknown function (DUF1278)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression