Detail



ID : Ahg925932

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|925932|scaffold_201493.1
Sequence
GCTAGCTGTA GGTACTAACC ATGTCGCCGG CCCCAATTTC TTCCTCCGTC ACTTGCCACA ATTTTGTCCT CCGTCACATG CTTCTGGTTT CGCCAACTTG TAGAGGAGGT AAGAACAAGA AGACAAAAAG ACTGCTCCTA AGTCCGATAA TCTCTATCTC AAGCTTCTCG TCAAAAAAAA CAAAACAAGG AAAGTCGCTA ACTGAGAAAC AAGGAAAGGA ACTGCGAGAG ATGAAAGGAG GCATCAACAT CTTGGACAAT CTTAACAATA GGTGTCTTGT TTCTCAAATT TGTGTATTTC TAAACAAAGT GAAAAAAGAA GGTCTAATGG TTTATTTTTA TTTGGTCTCT AGAGAGAGAC AAATCATGGA TATTGAAGCA TCCTTTGAGG CATGCAAGTC TCAACCAATT CATTCCACCA ATAAAAACGT GCAACCGGTT GAAGTTTTAC CACTGTTGGC ATATTTTGAT AGGTTGGTTG CTCCTTATTT TCCCTTTGAG ACAATCTTAA ATCTGAATTT CCGAATCGGC CAATTTTTTC TCATAATAGC CCTGCATGTA GACACAACAA TGAAGCCCTT GAAACCTGAC ACTTTACGGT ATTATATGTA TGTTGGCATT TTGTGAAGGA TCTCCTGTGG TGGTAA 
Length646
Protein Sequence
Protein Residue
Map Locationscaffold_7: 23126317.. 23127862
Download Sequence
A.thaliana
AGI-codeAT1G79730.1
Descriptionhydroxyproline-rich glycoprotein family protein
TAIR curator summaryEncodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Alias[ELF7][EARLY FLOWERING 7]
Gene coexpression
MR
MR Locus Description
16.7332 Ahg318761 titan9
33.7046 Ahg908915 Mannose-binding lectin superfamily protein
37.5899 Ahg479939
37.6696 Ahg488737
58.6856 Ahg912913
65.8407 Ahg901488 ubiquitin-protein ligases
78.2176 Ahg892255 RNA-binding (RRM/RBD/RNP motifs) family protein
89.9667 Ahg489864 SNARE-like superfamily protein
91.8477 Ahg472944 DNA repair metallo-beta-lactamase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression