Detail


ID : Ahg929882

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|929882|scaffold_302339.1
Sequence
GAGCTCTTCT TTACTCGGAA ATGGCTAAAT TCAAGATATT TGAAGTTGGA GTTTCAGAAA GTCTCGGAGA GCATATGAGA CGCTTCAACT TGGACATTAT TGAAAAGGCC GGCTTATGTA TCAGCACAGA GCTAGACTAT GTATATGAAC TGGTCATTGG AGTCATTGAT GTAACTAGAA GCAAAGAGAG GGGATATCAA ACATTGGTGA AAGAAGGGTT CTGTGCTGAG TTGGATGAGC TGAGGCAAAT ATACGAGGAG TTGCCAGAGT TTCTGCAGGA GGTTTCAGCG AAGGAGTTAG AACACTTTCC TCATTCGCAT AAGGAAAAGC TTCCTCCTTG TATCGTCTAT ATATTCAACA AATTGGTGGC TTTACTTGTT TTCCTATCCC ATATTGGAAG CTTTGTACCA GCAGATGCAA CAACTATTGG TTTAACTGAC AGCAAGTTCA TGACTGCGGA GCAATCTACA TTTATGAAAG ATCTGCATCA GGGAGGAATG ATGCTCAGGC AGGCAACTTC AAGATCTGTG TGTCTATTAG ACGAGTTTGG TAAAGGCACT CTAACAGAAG GTGAAGATTT CTCCACCCTC TGCATTGGAT AAAAGGCATG TGTTTGTGAA AACTTCT
Length627
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8082615.. 8085303
Download Sequence
A.thaliana
AGI-codeAT3G20475.1
DescriptionMUTS-homologue 5
TAIR curator summaryEncodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.
Alias[ATMSH5][MSH5][MUTS-HOMOLOGUE 5][MUTS-homologue 5]
Gene coexpression
MR
MR Locus Description
16.1245 Ahg929886 F-box and associated interaction domains-containing protein
34.4093 Ahg479572 MUTS-homologue 5
50.4083 Ahg479577 SHV3-like 3
76.6942 Ahg488737
94.2974 Ahg946563 glycosyltransferase family protein 28
97.2111 Ahg486235 Cysteine proteinases superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression