| Annotation |
|---|
| Description | jgi|Araly1|930428|scaffold_302885.1 |
| Sequence |
ATTTTCTGTT ACCAGAAAAG ATGGACATTG ATGAGATGGA TATTGAAGAG ATCGAGGCTA CTGCGGAGAT CAATCTATCT GAGCTAGGAG AAAGTTTTCT CCAGAGTTTC TGCAAGAAAG CTGCAACTTC CTTCTTTGAT AAGTATGGGC TTATAAGTCA TCAGCTCAAC TCCTACAACT TCTTCATTCA ACACGGGCTT CAGGATGTGT TTGAATCCTT TGGTGATATG CTTGTGGAAC CGTCGTTTGA TGTGATAAAG AAGAAGGATA ACGATTGGAG ATACGCTACG GTGAAATTCG GAAAAGTCAC TGTGGAGAAG CCCACTTTCT TTTCCGATGA CAAGGAGCTT GAGTTTCTCC CATGGCATGC CAGGCTTCAG AACATGACAT ATTCAGCAAG GATCAAAGTC AATGTCCAAG TTGAGGTGTT CATAAAAACT GTTGTTAAAA GCGACAAATT CAAGACGGGA CAAGACGAAT ATGTCGAGAA GAAGATACTT GAGGTCAAAA AGCAGGACAT TCTAATTGGT AGCATTCCTG TCATGGTGAA ATCTGTCCTT TGCAAAACAA GCGAGAAAGG AAAAGAAAAC TGCAGAAAGG GGGATTGTGC CTTTGATCAG GGTGGCTATT TTGTGATAAA GGGGGCTGAG AAGGTGTTTA TAGCTCAAGA ACAGATGTGC ACAAAGAGAC TGTGGATTTC TAACTCACCA TGGACAGTCT CTTTCAGGTC CGAAAACAAA AGAAATAGGT TCATTGTGCG CCTCTCGGAG AATGAGAAAT CAGAAGACTA TAAGAAAAGG GAGAAAGTAC TGACAGTGTA CTTCTTGTCG ACTGAGATTC CAGTCTGGCT CCTGTTCTTT GCGCTGGGTG TTTCGTCAGA CAAAGAAGCC ATGAATCTGA TTGCTTTTGA TGGTGATGAT GCAAGCATTA CCAACAGTCT CATAGCTTCT ATCCATGAAG CTGATGCAGT TTGTGAAGCT TTTCGCTGTG GGAACAATGC TTTAAGTTAT GTTGAACAGC AGATCAAACC TTGGAGGGCC GGCTTTTCAA GATGGGGAAA CGAAAGGGTC TACAATGGTA GATCGGGTGA GATGATGCGT TCTCTGATAT TCATGGGCCC AACTTTCTAC CAGCGACTTG TCCACATGTC AGAGGACAAA GTCAAGTTCA GGAACACCGG ACCAGTCCAC CCGCTCACAC GCCAGCCAGT CGCAGACAGG AAGAGGTTTG GCGGGATAAG GTTTGGAGAA ATGGAGCGAG ACTGCCTAAT AGCTCACGGT GCATCTGCTA ATCTGCACGA GCGTCTCTTC ACTCTAAGTG ACTCTTCTCA GATGCACATC TGCAGAAAAT GTAAGACCTA TGCGAATGTG ATCGAGAGGA CTCCAAGCAG TGGAAGAAAG ATCAGAGGGC CATATTGTAG AGTCTGCGCA TCCTCAGACC ATGTGGTTAG AGTCTATGTT CCTTATGGAG CTAAGCTTCT GTGTCAGGAG CTGTTCAGCA TGGGCATCAC TCTCAACTTC GACACCAAGC TCTGCTGATT ACCCCTCTTT ATTATGTA |
| Length | 1558 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 10369414.. 10372936 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G23780.1 |
| Description | nuclear RNA polymerase D2A |
| TAIR curator summary | This gene encodes the second largest, catalytic subunit of the nuclear DNA-dependent RNA polymerase IV (aka RNA polymerase D). The NRPD2 protein is found at nuclear foci that overlap or are adjacent to chromocentromeres but are not fully coincident with chromocentromeres. The loss of NRPD2 leads to the loss of cytosine methylation at pericentromeric 5S genes and AtSN1 retroelements but has no discernible effect on centromere repeat methylation. This suggests that Pol IV primarily affects facultative heterochromatin rather than constitutive heterochromatin. |
| Alias | [DMS2][DRD2][NRPD2][NRPD2A][NRPE2][OCP1][DEFECTIVE IN MERISTEM SILENCING 2][nuclear RNA polymerase D2A][OVEREXPRESSOR OF CATIONIC PEROXIDASE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 15.4596 |
Ahg935321 | Mitochondrial transcription termination factor family protein |
| 44.0227 |
Ahg472997 | evolutionarily conserved C-terminal region 9 |
| 64.5988 |
Ahg342637 | transmembrane kinase-like 1 |
| 71.3653 |
Ahg947495 | DEK, chromatin associated protein |
| 75.4983 |
Ahg480823 | Protein of unknown function (DUF630 and DUF632) |
| 85.3639 |
Ahg925396 | TRAF-like family protein |
| 87.3212 |
Ahg341690 | histone H2A protein 9 |
| 88.8144 |
Ahg484224 | SKP1-like 16 |
| 90.1388 |
Ahg944922 | Low temperature and salt responsive protein family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|