Detail



ID : Ahg933148

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|933148|scaffold_401136.1
Sequence
TCTTCTTCTT CTAAATTTTC TTCCATGGAT ATCGAAAAGG CAGCGAGCAG AAGAGAAGAA GAAGAACCCA TTGTTCAAAG GCCAAAGCTA GACAAAGGCA AAGGCAAAGC TCACGTCTTT GCTCCTCCTA TGAACTACAA TCGGATCATG GACAAACACA AGCAAGAAAA GGTTAGCGCC GCCGGGTGGA AAAGAGGTGT AGCGATCTTC GATTTTGTTC TTAGACTCAT CGCAGCCATC ACGGCAATGG CTGCTGCAGC GAAGATGGCG ACAACGGAAG AGACTCTTCC TTTCTTCACT CAGTTCTTGC AGTTCCAAGC TGAATACACT GATCTACCAA CTATGTCATC TTTTGTGATC GTGAACTCAA TCGTGGGCGG CTACCTAACC CTCTCATTGC CTTTTTCCAT TGTCTGTATC CTCCGCCCTC TCGCGGTGCC TCCTAGGCTA TTCCTGATCA TATGTGACAC GGCTATGATG GGCCTCACCA TGATGGCGGC ATCCGCTTCT GCAGCCATAG TTTATTTGGC GCACAACGGG AATTCAAGCT CGAACTGGCT TCCGGTTTGC CAGCAGTTTG GTGACTTTTG CCAAGGAACG AGTGGCGCCG TGGTGGCATC CTTTATTGCT GCGACTCTTC TCATGTTCCT TGTCATCCTA TCTGCATTTG CACTCAAGAG ATCGACCTGA AAATTCGGAT ATATCCTCTT 
Length710
Protein Sequence
Protein Residue
Map Locationscaffold_4: 11005532.. 11006833
Download Sequence
A.thaliana
AGI-codeAT2G27370.1
DescriptionUncharacterised protein family (UPF0497)
TAIR curator summary
Alias[CASP3][Casparian strip membrane domain protein 3]
Gene coexpression
MR
MR Locus Description
5 Ahg948576 F-box/RNI-like/FBD-like domains-containing protein
22.2261 Ahg947953
22.7596 Ahg952485 Seven transmembrane MLO family protein
24.3721 Ahg933088
25.6125 Ahg949132
26.2679 Ahg349127
27.0185 Ahg921422 Domain of unknown function (DUF220)
40.8412 Ahg896474 Cellulase (glycosyl hydrolase family 5) protein
46.3141 Ahg928374
51.8073 Ahg910982
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression