Detail



ID : Ahg933893

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|933893|scaffold_401881.1
Sequence
ACCAAACCAA ATTAAAGAAG AAAGAATGGC GTCTAGGGTT CTTCTGATTT TGTGTCTGTC TTCTCTCTTC TTCTTCCTCG CCGCTTCCAC GAAGGAATAT CCCAGCCAAG CAAAAATCTT TGACGTCAGA AACTATGGTG CTCACGGTGA TGGCCGAAGA GATAACGCTT TCTCGTTTAC AAAGGCGTGG AACGAAGCTT GCCAATGGAG TAACGGAAGA TCAACGGTCT ATATTCCTCC CGGAATATTC TATCTCCGTC AAGTAACGTT CACTGGTCCT TGCAAAAACC CTATTACTTT TATTATCAGA GGAACTTTAT TGGCTCCTCG TAATCCTTAC GCTATCAAAC AAGATGAATG GATACTTTTC AAGTACGTCG ATAATCTCAC GGTTACTGGC GGTGGATTAC TTGACGGCCA AGGATCTTAT TCTTGGCCTC TCAATGATTG TAACAAGAAC ACCAATTGTC GTACACTAGC TATGAACATT GGGTTTGCTT TTGTTAAATC ATCGAAGATC AACGGTCTAA GATCTATCAA CAGCAAAATG GGACATTTCA ACTTATTCTC GGTCGAGGAT TTTAACATTA CAGGCGTTAC CATCACTGCT CCTGGAGATA GCCCTAATAC CGACGGAATC AAGATCGGGA AATCTAGCCA TATGAATATC TTCAACGTCA CTATCGGAAC CGGTGACGAT TGTATCGCAA TCCTTGACGG AACCAGCAAT TTGGATATCT CTGATGTCAG GTGCGGACCA GGGCATGGGA TTAGTGTCGG GAGCCTTGGG AGATATAAAG AGGAGAAGAA CGTCCAGGGC TTAACAGTCA GAAACTCGAT TATCAACGGT ACAACTGACG GTTTACGTAT CAAGACATGG GCTAAGTCGG TATCGCAGAT TTCGGTTTCG AATTTCCTCT ACGAGAACAT CCAAATGATC AATGTTGGAA ACCCTATCGT CATTGATCAG CAGTATTGTC CACACGGACA ATGTGATAGT CCTGGAAAGT ATGCTTCTCA TGTTCAGATA AAAGACGTCA AGTATAACAA AATTTGGGGA ACTTCGACAA GCAAAGAGGC TTTGAAGATG CAATGTAGTA AAGCGTTTCC TTGTCAAGAC GTCGAGCTCT CAAATATCAA CTTGAAATAC GTTGGACGTG ACGGTTTAGT CACGGCTTTG TGTGAGAACG TTGGTGGATC GATTCGTGGC AAGATTGTTC CTGCAAATTG CCGGATTTGA TCTTTATTAG ATTGTTGGAT 
Length1260
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT2G33160.1
Descriptionglycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
TAIR curator summary
Alias[NMA][NIMNA (Sanskrit for '"sunken" or "low")]
Gene coexpression
MR
MR Locus Description
5.65685 Virus0355
7.14143 Virus0721
7.14143 Ahg932849
15.2971 Virus2149
16.9115 Ahg924371
17.5499 Ahg950059 Cysteine-rich protein
22.2935 Ahg945826
34.7851 Ahg315628
35.0714 Ahg927439
46.4973 Ahg948922 Protein of unknown function (DUF784)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression