Detail



ID : Ahg936540

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|936540|scaffold_500731.1
Sequence
TCGTCAAATT AGCATTGGTC ATGGATACAC ACACGCTAAA ATCCGTCTCA GATTTGCCTG GAAATTTCCG TTCAGCTTTT AGTTTCAGAT ACTTTAACTC GCTGCAGAGT GAGTGTTTTC CACTGTGCTT CCACTCCGAT ATCAACATGG TTATTTCAGC GCCAACGGGA AGTGGTAAAA CCGTACTTTT TGAGTTATGC ATTTTGAGGC TCCTTTCAAA GTCCATAGCT AAGGAAGGAA TGTTTCTCCA TGCTAAAGGA GCTCTTAAAG CAGTTTACAT ATCTCCGTCC AAGGCTTTAG TTCAGGAGAA GCTGCGTGAT TGGAATCAAA AGTTTAATTC ATGGGGAATC AGTTGTTTGG AGCTGACTGG TGATAATGAA ACCTACAGCA CAAGGAATAT ACAAGACGCA GATATAATCT TGACTACACC TGAGAAATTT GATGCAGTGA GCCGTTATCG CGTTACCAGT GGAGGCTTAG GTTTCTTCAG TGATATTGCG CTTGTGCTCA TTGATGAAGT TCACCTACTG AATGATCCGC GTGGAGCTGC TCTTGAGGCA ATAGTCAGTA GAATAAAGAT TCTTTCTAGC AATCATGAAC TAAGGTCAAG TCCTCTAGCC TCCGTGCGTC TTCTGGCTGT CTCAGCTACT ATCCCAAACA TTGAGGATTT AGCTGAATGG CTCAAGGTTC CTACTGCAGG AATTAAGAGG TTTGGCGAAG AAATGAGACC TGTTAAGTTG ACAACTAAAG TTTTTGGTTA TGCTGCTGCC AAGAATGACT TCCTCTTTGA AAAGCGCCTT CAAAACTATA TTTATGACAT TTTAATGCAA TACTCAAAAG GAAAATCTGC CTTAGTTTTC TGCTCGACAC GAAAAGGCGC TCAAGAGGCT GCACAAAAGC TTGCTCAGAC TGCAATGACC TATGGTTACT CAAATCCATT TATTAAAAGC AGAGAACAGC TGGAAAGATT AAGGGAGGCT TCGCCAATGT GCAGTGACAA ACAAATGCAA TCATATATCC TCCAAGGCGT TGGTTATCAC AATGGTGGAC TTTGCCAAAA GGACCGCAGC CTCGTAGAAG GGCTCTTCCT TAATGGAGAT ATCCAGGTTA TCTGCACGAC CAACACTCTT GCCCATGGAA TCAACCTGCC TGCACATACA GTCGTCATAA AATCAACTCA ACATTTCAAC AAGGAAAAAG GTCACTACAT GGAATATGAT CGTTCCACAC TACTACAGAT GTGTGGCAGG GCTGGTCGGC CTCCATTTGA TGACACGGGA ATGGTTATTA TTATGACCAG AAGAGAGACG GTCCATCTGT ATGAGAATCT CTTGAATGGA TGTGAGGTTG TTGAATCACA ATTGCTGCCA TGCTTAATAG AGCACCTAAC CACAGAAATA GTTCAACTTA CTATCTCTGA CATTACACGG GCAATTGAGT GGATGAAGTG CTCATACCTG TATGTCAGAA TGAAAAAGAA TCCAGAGAAT TATGCTATTA AGAAAGGAAT TCCGAAAGAT CAAGTAGAGA AGCATTTGCA AGAGCTTTGC CTTCAGAAGA TCAATGAGCT TTCACAATAT CAGATGATCT GGACTGACAC AGACGGTTTT GTTTTGAAAC CAGAAGAGCC CGGAAGGCTG ATGACAAAGT ATTATCTAAA GTTTGACACA ATGAAGTACA TTATTAATGC GCCAACGGGC TATAGCTTGG ATGAGGCTCT TCATATTGTG TGTCGTGCTG AAGAGATATC TTGGATACAG CTCAGACGCA ATGAGAAGAA GACCTTAAAT GATGTAAATG CAGATAAAGA AGGGCGGCTC AGATTCCACA TCAACGATAA TAAAGGAAAG CGGAAAAAAC GCATCCAAAC CAGAGAAGAG AAACTATTTG TGCTTGCAAA TGATTGGTTG ACTGGGGATC CTTCAGTGCA TGATTTATCC ATGACTCAGG ATGCTAACTC TATTTGCTCG AATGGATCCA GAATAGCGAG ATGCATGAAA GAGTACTTTA TATACAAAAA GAATTATAAA GGAACGATTA GCTCAACTCT TCTGGCAAAA TCACTCTATC AAAAGCTGTG GGACGACAGT CCATATTTGT TGAAACAATT GCCTGGCATT GGAATGGTTA CTGCGAAGGC ACTTCATTCA ATGGGAGTCA GGTCATTTGA AGCTCTTTCT GAAGCTGATC CACGAAGGAT AGAGATTGTT ACCGGTCGAA AATATCCTTT CGGAAATACC ATCAAGGAGT CTCTATCATC CCTACCTCCA AAAGTTGAAA TCAAGGTCCA GGAAGTTGAC TGCCAGAAGC AAGGGATATC TAAACTAGCA GTCACATTGA CACGGCTATC ACAACCTCTC CAATCCACAA AACGCCATTA TGCTGACATG ATTGTTGGTT CAGAGGAAGA GAATCGTATT CACTTTCATG AGAAAATAAG AATGGAGGAC TTCTCCAGTC CATATAACGT AACCATACTC CTGGAAAGGC CTCATCAACA AGCAAAGGTG ACTGTGAAGG CTGATCTCAT CTTCGAAGAA TACATTGGTA TTGACCTCCA TGAAACACTT CTACTCAAGA AGGCAAACAA CAACAAAATA AACTACAAAA GCGAAAACAG GCTGCCTCAC TATTATCCTC CTATGGTGGC TGCCTGCGTA GTAGATGACA ACCCAGTTAC ATCTGGACCT TCAAACCGAA AGGATAAAAA AGATGATATG CCTAGTTTCA AACTCATAGA TGAGGATTCA GAAGAAGAGA AAGAACCCTA TGTGACGATG GAAGAAGATG ACTGTGTCAT TATCAATGAA CATACAGTCT TTGACCACAT ACGTGAAAAA GCAAAGTGTT TTCCTTCATT GAACACTTTG AATCCGACCA CCTCTCCGGC ATCAGGAAAA TCAAATCTGA AAAGGAAAAG CTTAGTGGAC AAGTCTCCTG AACTGGATCC TCTATTTCAG TATGATTCTG TCTTTGACTT ACCTACAAAT ACTAAAGACG TCAAACAAAG CGCACAGCAA ATTACTAAGC CGGGTTATGC AAGCTTTGCA GAGAAAACTG AAACAGAAAG GCCATTCTCA GATGAAACAA TATTCAACTA CATAAGGAAA AGGTCCAAGA ATTCCCCGGT CCTCGCCACA TCAAAACTCG AGGATCCCAT AACCATTTCT TCTCAAGAAG GAAGAAACGC AGAGATAAGT CCGTATAGAG CTTACGGATT ATTGGTTAGT CCTGCTACTA AAAAGCCAAG GATCACATCT GATGCACCTT CAGAAATTTT GCCCTTTGAT ATCTCGATGG TGAAGAGAAG TGGCACGAAC TTAGAGCAGG AGAAAAGACT CTGCTCGACA TTTGCAGGTA AGTCCAATGT CTCTGATTCT TTTCTTGGAT TTAAAAGTAT CTTCTCTTTT CTGTGACTTT CGCATATACA TACCAA 
Length3436
Protein Sequence
Protein Residue
Map Locationscaffold_5: 3782322.. 3788647
Download Sequence
A.thaliana
AGI-codeAT3G27730.1
DescriptionATP binding;ATP-dependent helicases;DNA helicases
TAIR curator summaryDNA helicase required for interference-sensitive meiotic crossover events.
Alias[MER3][RCK][ROCK-N-ROLLERS]
Gene coexpression
MR
MR Locus Description
20.4206 Ahg947026
27.55 Ahg933186 low-molecular-weight cysteine-rich 5
77.6531 Ahg948060 IAA-leucine-resistant (ILR1)-like 3
86.4986 Ahg316828 cytochrome P450, family 79, subfamily C, polypeptide 1
95.0105 Ahg891277
96.5453 Ahg928121
98.7421 Ahg946870 RING/U-box superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression