Detail



ID : Ahg937074

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|937074|scaffold_501265.1
Sequence
TGTTTTCAGG ACTCTCATCG ATGAAGTTCT TCTCCGATCA AAACCTCTCT TACGCTGATA TTCTTCTCCC TCACGAAGCT CGTGCTAGAA TCGAAGTCTC TGTTCTTAAT CTCGTACCTA ATTCGAGATG TTCTGGGTTT TTGAAAATTT GGGGAATAAA ATTGAAAATT CTCGTTGGAA CAGATCAATA GGAAGAGAAG CAATAGCTGT A 
Length211
Protein Sequence
Protein Residue
Map Locationscaffold_5: 10509214.. 10509554
Download Sequence
A.thaliana
AGI-codeAT1G63990.1
Descriptionsporulation 11-2
TAIR curator summaryEncodes AtSPO11-2, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. Plants homozygous for atspo11-2 exhibit a severe sterility phenotype. Both male and female meiosis are severely disrupted in the atspo11-2 mutant, and this is associated with severe defects in synapsis during the first meiotic division and reduced meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. Required for double-strand break induction.
Alias[SPO11-2][sporulation 11-2]
Gene coexpression
MR
MR Locus Description
3.31662 Ahg936205 Putative membrane lipoprotein
7.34847 Ahg894891 TATA-binding related factor (TRF) of subunit 20 of Mediator complex
11.6619 Virus3925
14.9666 Virus1474
15.2971 Ahg947362 Protein of unknown function (DUF674)
24.1247 Ahg949644
28.7054 Ahg949368
31.7805 Ahg327063
34.7275 Ahg887689
34.7275 Ahg896094
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression