Detail



ID : Ahg937469

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|937469|scaffold_501660.1
Sequence
TTGGTTTTGC AATCCAACAA CATGGATAAG CTTCACAATA TTCTTAATCT TCTTCTACCT CCTCTTACCA TCAGTTTTCT TGTCTTCTTT TACCCATTTT ATCTTTTGAT CAAACTTGTG AGTTGTCTTT ACAAGAACAT TCGCTTTGAA AACGTTGCCG GAAAAGTAGT TCTAATCACC GGAGCTTCCT CCGGCATTGG AGAGGATATT AACTTTTGGG GCTCAACGTA CATCACTTAT TTTGCTATTC CTCATCTTCG AAAAAGCAAA GGAAAAATTG TTGTGATTAC TTCTGCTACG GCAATTATAC CTTTGCCATC GGCAAGCGTC TATTCAGCAA GCAAAGCAGC TTTATTAAAA TTCTTTGAAA CATTAAGAGT TGAGATCAGT CCATGTATCA AAATAACAAT TGCTATTCCC GAATTTATAT CTACAGATAT GACCACTCAG TTTAAAGAAA TGTATGGTTC AGATTTCATC CTTTCAGAAT CAGTGAGTAA ATGCGCAAAA GCCATCTTCA GAGGTATTGG TAGAGGAGAG ACATACATAG TAGAGCCATC TTGGATAAAA TCGATCATTT TGATACAAAA TGTTTGTCCA GAAATCGTTG ACTACGTACT CAACTATATA TTTGTTCGTT ATGGCAAACC TTATTTCAAG CGTGATTGAT CATATCGATC TATCCAAGAT CT 
Length692
Protein Sequence
Protein Residue
Map Locationscaffold_5: 12502973.. 12504572
Download Sequence
A.thaliana
AGI-codeAT3G47350.2
Descriptionhydroxysteroid dehydrogenase 2
TAIR curator summaryEncodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Alias[ATHSD2][HSD2][HYDROXYSTEROID DEHYDROGENASE 2][hydroxysteroid dehydrogenase 2]
Gene coexpression
MR
MR Locus Description
9.8995 Ahg891003
11.9164 Ahg951731
19.2873 Ahg924030
21.9773 Ahg359639
23.0434 Ahg931280
26.8328 Ahg916828
30.8058 Ahg930485
30.8058 Ahg941716
40.8901 Ahg476218 MLP-like protein 31
45.1664 Ahg889231 Defensin-like (DEFL) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression