| Annotation |
|---|
| Description | jgi|Araly1|937600|scaffold_501791.1 |
| Sequence |
TTATAACTTT TTGTGCTTTC GATGGCGGTT TCAGAGCAGA GTCAAGACGT GTTTCCATGG CTTAAATCGT TACCGGTTGC TCCAGAGTTC AGACCTACTT TAGCAGAGTT TCAAGATCCG ATCGCCTACA TTTTTAAGAT CGAAGAAGAA GCTTCTAGAT ACGGAATCTG TAAAATTCTG CCTCCACTGC CTCCTCCTTC TAAAAAAACC TCAATTTCTA ACCTCAACCG TTCTCTGGCG GCAAGAGCGG CGGCGAGGGT TCGTGACGGC GGCGAGAGTT CGTTTGATTA CGACGGTGGT CCCACATTCG CCACGCGGCA ACAGCAGATC GGTTTTTGCC CTAGGAAGCA GCGTCCCGTG CAGAGACCTG TGTGGCAGAG CGGAGAGCAT TACAGTTTTG GTGAGTTCGA GGCCAAAGCT AAGACCTTTG AGAAGAATTA TCTGAAGAAA TGTGGCAAAA AGAGTCAACT CTCTGCCCTA GAAATCGAAA CACTTTACTG GAGAGCAACA GTGGATAAAC CTTTCTCTGT TGAGTATGCC AATGACATGC CAGGTTCGGC TTTTATCCCT CTGAGTCTGG CAGCTGCGAG GAGGAGAGAG TATGGTGGCG ATGGAGGAAC AGTTGGTGAG ACAGCTTGGA ACATGAGGGC AATGTCTAGA GCCGAAGGAT CATTGCTTAA GTTCATGAAG GAGGAGATTC CTGGAGTTAC ATCACCAATG GTGTATATTG CTATGATGTT TAGTTGGTTT GCTTGGCATG TGGAGGATCA TGACCTTCAT AGTCTCAATT ACTTGCATAT GGGTGCTGGT AAGACTTGGT ACGGTGTGCC AAAGGATGCT GCTGTGGCTT TTGAGGAGGT GGTTAGGGTT CATGGTTATG GTGGAGAGCT TAATCCTCTT GTGACCATTT CTACTCTTGG TGAGAAGACA ACTGTGATGT CACCTGAAGT TTTTGTTAAA GCTGGAATAC CTTGTTGCAG GTTAGTACAA AATCCTGGAG AGTTTGTTGT CACTTTTCCA AGAGCATATC ATTCAGGGTT TAGTCACGGA TTCAATTGTG GAGAAGCATC TAACATTGCA ACTCCCGAAT GGTTGAGAGT GGCTAAAGAT GCTGCTATCC GCCGAGCTGC TATAAATTAC CCTCCAATGG TTTCTCATCT CCAGTTACTA TATGACTATG CATTGGCTCT AGGTTCTAGA ATGCCAACAA GCATCAACAC CAAACCACGG AGTTCTAGAT TGAAAGATAA GAAAAGAAGC GAAGGAGAAA GATTGACCAA AAAGCTGTTT GTGCAAAACA TTATCCACAA CAATGAATTG CTCTCTTCTC TCGGAAAAGG ATCCCCTGTG GCCCTTCTCC CACAGAGTTC TTCAGATATA TCAGTTTGTT CTGACCTACG AATTGGATCC AATTTGATAA CTAACCAGGA AAACCCAATC CAATTAAAGT CTGAGGACTT AAGTTCTGAT AGTGTTATGG TCGGTCTCAA CAACGGTTTA AAGAATACAG TTTCAGTAAA AGAAAAGTTT ACATCTTTAT GTGAAAGGAA CAGAAATCAT CTGGCAAGCA GTGAGAAGGA CACTCAAGAA ACTCTGTCTG ATGCTGAAAG GAGGAAAAAT GATGGAGCTG TTGCGCTTTC GGATCAAAGG CTTTTCTCTT GTGTTACATG TGGAGTCTTA AGCTTTGATT GTGTAGCTAT TGTTCAACCT AAAGAAGCAG CAGCTAGATA TCTCATGTCT GCAGATTGTA GCTTCTTCAA TGATTGGACA GTTGTTTCCG GGTCTGCAAA TCTTGGTCAG GCTGCAAGAT CACTTCATCT GCAAAGCACG GAAAAGCATG ATATGGATTT CTTCTACAAT GTTCCTTCTC AAACTACGGA TCACTCAATG AATACAGGTG ACCAAAAAAC TTCAACAGTG TCTCTAACAA CAGCTCATAA AAAAGATGGT GCTCTTAGTT TGTTAGCTTC AGCGTATGGA GATTCTTCTG ATTCTGAGGA AGAAGGTCAC AAAGTCTTAA ATGCTTTTGT CTCGGAAGAT AGAAAGTATG ACCAAAGTGG TTCTTGTGCA TATGAAGCAT CATCTTTTGA CACAGATGGC AAAGAGGAGG CTAGAGATGG TCAATCTTCT GATTCTAACA GACAAAGACT TGTATGTAGG AAAGAGACAG GGGTTGTTCA GGGCTCAAAT GCTACTTCTA CTTGTTCGAC GCTTTCTTGG ACCACTGAAC ATAGTAGGTT AAGCAAAGGC AGCAATACAT CTCTACCCTT TGTTCCAAGA TCTGATGACG ATTCTTCTCG GTTGCACGTG TTTTGTCTAG AGCATGCTGC AGAAGTGGAA CAGAAACTCC TTCCTATTGG GGGAATTCAT TTAATGTTAC TGTCCCATCC AGAGTACCCC AGGATAGAGG CTGAAGCAAA GATAGTTTCC GAAGAGCTCG TTATCAATCA CGATTGGAAT GATACTGAAT TCAGGAATGT GACCCGAGAG GATGAGGAAA CGATTCAGGC AGCCTTGGAT AATGTTGAAG CTAAGGGTGG GAACAGTGAT TGGACTGTAA AATTGGGTAT TAACCTTTCT TACAGTGCTA TTCTCAGTCG CTCTCCTCTG TACAGTAAGC AGATGCCTTA CAACTCCGTC ATATACAATG CATTCGGTCG CAGCTCTCCA GCAACAAGCT CACCCTTGAA ACCCGAAGTC TTTGGTAGAA GATCTTCCAG ACAGAGGAAA TATGTTGTTG GAAAATGGTG TGGTAAGGTT TGGATGTCGC ATCAGGTGCA TCCCTTTTTG CTGGAGCAGG ACTTAGAGGG GGGAGAATCT GAAAGAAGTT GTCATCTCCG AGCTGCTATG GATGAGGATG CCGCTGGAAA GAGATTTTTT CCTAATAATG TTTCTAGAGA TGCAACAACA ATGTTTGGAA GAAAGTACTG TAGGAAGAGA AAGGTCAGGG CAAAGGCTGT GCCACGCAAG AAGCTTACTT CTTTTAAGAG GGAAGATGGA GTTTCTGATG ACACATCAGA AGATCATTCT TATAAGCAGC AATGGAGGGC TTCCGGGAAT GAGGAAGAGT CTTATTTTGA GACAGGGAAT ACAGTTTCTG GTGATTCGTC AAATCAAATG TCTGATCAGC AGCTCAAGGG AATTCGTCGA CACAGGGGTG TTAAAGAATT TGAGTCCGAT GATGAGGTTT CAGATCGTTC ACTTGGAGAA GAATATGCTG TAAGGGAACG TGCAGTTTCA GAGAGCTCAA CGGAGAATAG CTTTCAGCTA TATGGACATT CAATCGACGA TAATGCTTTG GAGGGCTCTT TATATGGTCA TGATGATAAT AAACTCTACA GGCACCCTAA GGGTCTTCCA AGGAGCAAAC GGACTAATGT GTTTAGGAAT CCGGTTTCAT ATGATTCAGA GGAAAATGAT GTTTATCAGC GAAGGGGAAA TATTCAAGCT AGTCGAATAG GTGGTGAGTA TGAGTCAGAA GAGGATTCTC TGGAGGAAGA GGACTTTTGC AGTACAAGGA AAAGACAAAC AAGGTCCACA GCTAAACGAA AAGTAAAAAC CGAGATAGTT CAGAGTCCGA GAGAGACGAA TCAAGAATTC GATTCATACA TGGAAGGACC TAGCACACGG CTTAGGGTGA GAATCCCAAA GCCCTCAAGA GTGTCTTCAG AAACGAAACC AAAGAAAATT GGTAAGAAAG GAAGTCGTAA TGCTTCCTTC TCCAGAGTTG CAACTGAAGA AGATGTGGAG GAAGAAGAAG AAGAAGAAGA AAAAGAGAAT GAGGAAGAGG AATGTGCGGC GTACCAATGT GACATGGAGG GTTGCACAAT GAGTTTTAGG TCGGAAAAAC AGTTGACATT GCATAAAAGA AACATCTGCC CTGTTAAAGG CTGTGGTAAA AACTTCTTCT CACACAAGTA TTTGGTTCAA CACCAGCGAG TTCACTCAGA CGACCGTCCT CTGAAATGTC CATGGAAGGG CTGTAACATG ACGTTTAAGT GGGCTTGGTC TAGAACTGAG CACATAAGAG TTCACACAGG CGCTAGGCCT TATGTTTGCG CTGAACCGGG TTGTGGTCAA ACATTCAGAT TCGTCTCTGA CTTCAGCAGG CACAAACGAA AAACCGGTCA TTCAGTTAAA AAGACCCAGA AAAGGTGACT GACTTAGTCC TTAAATCATG |
| Length | 4180 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 13135021.. 13140023 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G48430.1 |
| Description | relative of early flowering 6 |
| TAIR curator summary | Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. |
| Alias | [JMJ12][REF6][Jumonji domain-containing protein 12][relative of early flowering 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg928823 | sequence-specific DNA binding transcription factors |
| 21.2132 |
Ahg474976 | Disease resistance protein (TIR-NBS-LRR class) family |
| 25.6515 |
Ahg491781 | |
| 52.8488 |
Ahg482124 | glucan synthase-like 3 |
| 53.8331 |
Ahg482661 | ARM repeat superfamily protein |
| 54.2771 |
Ahg913087 | PLATZ transcription factor family protein |
| 68.695 |
Ahg331106 | RING/U-box superfamily protein |
| 69.5989 |
Ahg480836 | H(+)-ATPase 1 |
| 80.1998 |
Ahg903021 | auxin transport protein (BIG) |
| 85.7671 |
Ahg478682 | multidrug resistance-associated protein 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|