Detail



ID : Ahg937966

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|937966|scaffold_502157.1
Sequence
TGGTGGTGGT TGTGCTGGTG AATGGCGGGG TTTTTCTCGC TAGACGGTGG TGGAGGAGGA GGCGGAGGTG GAGGAAACAA CCAAGAAGAT CACCGGAGCA ACACAAACCC TCCTCCGCCT GTATCAGAAG CTTGGCTCTG GTATAGAAAC CCTAACGCAA ACGCAAACAC AAACGTAAAC GCTCCTTCTT CTTCAAACGC TGCTTTAGGA ACACTTGAGT TATGGCAAAA CCACAATCAG CAAGAAATCA TGTTTCAGCA TCAGCAACAT CAACAAAGGT TGGATCTTTA CTCTTCCGCC GCAGGTTTAG GTGTTGGACC AAGTAATCAT AACCAATTCG ATATCTCCGG CGAAACTTCA ACCGCCGGCG CCGGAAGAGC TGCGGCGATG ATGATGATTC GTAGTGGTGG CGCCGGAGGA GGAGGAGGAG GAAGTGGTGG TGTGAGCTGT CAAGACTGTG GGAATCAAGC GAAGAAAGAT TGTGCTCACA TGAGGTGTAG AACTTGTTGT AAGAGCCGTG GCTTCGAGTG TCCTACTCAC GTGAGAAGCA CGTGGGTTCC TGCTGCTAAA CGCCGTGAGA GACAACAGCA ACTAGCTACG GTTCAGCCGC AAACGCAGCT ACCACGCGGT GAGAGCGTTC CTAAACGCCA CCGTGAGAAT TTACCGGCAA CTTCTTCATC TCTTGTCTGC ACTCGTATAC CTTCTCATTC AGGGCTAGAA GTTGGGAATT TCCCGGCGGA GGTGAGTTCA TCAGCAGTGT TTAGATGCGT GCGTGTGAGC TCAGTAGAAG ATGGAGAAGA AGAATTTGCT TACCAAACAG CCGTAAGCAT CGGGGGTCAC ATTTTCAAAG GCATTCTATA CGACCTCGGT CCTGGAAGTA GTGGTGGCGG AGGCTACAAC GTTGTTGCCG CCGGTGAGAG CTCCTCTGGT GGTGGTGGAG CTCAACAGCT GAATCTCATA ACAGCTGGCT CTGTAACGGT TGCTACCGCT TCTTCCTCTA CTCCAAACCT CGGTGGTATT GGCAGCTCAT CCGCCGCCGC AGCCACGTAC ATTGATCCAG CCGCTCTTTA TCCAACTCCG ATCAATACAT TCATGGCCGG TACACAATTC TTTCCCAACC CAAGATCGTG ATGAAAATCT GACATAAAGC A 
Length1151
Protein Sequence
Protein Residue
Map Locationscaffold_5: 14630929.. 14632512
Download Sequence
A.thaliana
AGI-codeAT3G51060.1
DescriptionLateral root primordium (LRP) protein-related
TAIR curator summaryA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC)
Alias[SRS1][STY1][SHI RELATED SEQUENCE 1][STYLISH 1]
Gene coexpression
MR
MR Locus Description
40.6694 Ahg481664 transposable element gene
59.9333 Ahg917658 subtilase 4.13
67.3498 Ahg931324
87.55 Ahg933363
89.7106 Ahg921560 FBD, F-box and Leucine Rich Repeat domains containing protein
94.2868 Ahg316947 Pectin lyase-like superfamily protein
95.4987 Ahg936611 P-glycoprotein 17
98.1835 Ahg487214 Cytochrome P450 superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression