| Annotation |
|---|
| Description | jgi|Araly1|938546|scaffold_502737.1 |
| Sequence |
TATATTAAAA AAAAAAACAG ATGCAACCTT GGAGAAGAAA ATTTCCATTG TTCGAAACAG GAGTGACAAT GAAACAGAGG AAGAACAGTA ATCTCTCAAT CTTCGTCGTC ATCTTCTCTG TTTTCCTCTT TGGGATCTTC ATGTACAATG AAGACGTCAA ATCCATTGCA GAGTTTCCTT TCTCCACCTC AAAACCTAAC GACGTCCACG ACGAGACGAC ACCGATTACA GAGACTACAA CACTACCGGT TCAAGAACCT ATCAAGAACT CAGACCCAAT TCAGGAATCT GTTAAAATCC CAGACTTAGA TCAAGATTCA GTTAAAGACG CAGCAGAACC AGTTAAGGAG GAGGTATCGA AAACAGAGGA AGTGAAAAAG ATTGAGCTTT TCGCTGCCAC GGAGGATGAA GAAGACGTGG AATTGCCGCC GGAGGAGTGT GATTTGTTCA CCGGAGAATG GGTTTTTGAT AACGAGACGC ATCCGTTGTA TAAAGAGGAT CAGTGTGAGT TCTTGACGGC GCAAGTGACT TGCATGAGAA ATGGAAGAAG AGATTCTCTG TATCAGAACT GGAGATGGCA ACCAAGAGAT TGTTCTTTAC CAAAGTTCAA AGCGAAATTG CTGTTGGAGA AGCTAAGGAA CAAGCGAATG ATGTTCGTTG GAGATTCCCT AAACCGGAAC CAATGGGAAT CAATGGTTTG TTTGGTTCAA TCAGTGGTTC CTCCCGGTCG AAAAAGCTTG AACAAAACCG GTTCTCTTTC CGTTTTCCGA GTTGAGGATT ATAATGCGAC GGTGGAGTTT TATTGGGCAC CATTTTTGGT GGAATCAAAT TCAGATGATC CAAATATGCA TAGTATACTT AACCGTATAA TAATGCCTGA GTCCATTGAA AAGCATGGAG TCAACTGGAA AGACGTTGAC TTCCTTGTTT TCAACACTTA CATTTGGTGG ATGAACACAT TCGCTATGAA AGTCCTACGC GGATCGTTCG ATAAAGGGGA CACCGAGTAT GAGGAGATCG AACGGCCAGT AGCTTATAGG AGAGTGATGA GGACTTGGGG AGATTGGGTG GAACGAAATA TTGATCCTCT GCGTACCACT GTTTTCTTTG CTAGCATGTC TCCTCTTCAC ATCAAGAGCT TGGATTGGGA GAATCCAGAT GGGATAAAGT GTGCATTAGA GACGACACCA ATCCTAAACA TGTCAATGCC ATTCAGCGTA GGAACAGACT ACAGGCTGTT TTCAGTAGCG GAAAACGTCA CGCATTCTCT TAAAGTTCCG GTTTACTTTC TCAACATTAC CAAACTCTCC GAATACCGGA AAGATGCTCA CACTTCGGTT CACACAATCC GGCAAGGCAA AATGCTGACG CCGGAGCAAC AAGCCGATCC CAACACTTAC GCCGATTGTA TCCATTGGTG TCTTCCCGGT TTACCTGACA CGTGGAATGA GTTCCTTTAC ACACGTATCA TTTCTCGTTC GTGACCTAAA AAAATTTGAA ATATCT |
| Length | 1506 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 16775578.. 16778109 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G55990.1 |
| Description | Plant protein of unknown function (DUF828) |
| TAIR curator summary | Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). |
| Alias | [ESK1][TBL29][ESKIMO 1][TRICHOME BIREFRINGENCE-LIKE 29] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.40312 |
Ahg482815 | Laccase/Diphenol oxidase family protein |
| 10 |
Ahg941250 | Cellulose synthase family protein |
| 17.7482 |
Ahg325159 | cytochrome p450 79a2 |
| 20.1494 |
Ahg923946 | pectin methylesterase 2 |
| 27.3861 |
Ahg332502 | Major facilitator superfamily protein |
| 27.6586 |
Ahg933387 | laccase 2 |
| 36.5787 |
Ahg474258 | ABC-2 type transporter family protein |
| 36.7287 |
Ahg913197 | Protein of unknown function (DUF579) |
| 38.1576 |
Ahg492981 | cellulose synthase family protein |
| 38.3406 |
Ahg318457 | chitinase-like protein 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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