| Annotation |
|---|
| Description | jgi|Araly1|939243|scaffold_503434.1 |
| Sequence |
TTTGCAGGAT AGATTTGGTC AGTCATGCAT TCTCTGTTAA TCCATGGAAG AAAGTCTCTT TTGAGAGGTT CAGTGCAAAA ACATGTATTC TCTGCTTTTC CCAGAACGTT CTCCTCCGTA AGTGATGGTC GAAAATGGAG GAGGAATTTG CCAGTCGTCG CTTACGAGGG TCTAACTCTA AAACAGGCAG AAAGGTTTAC GAGGTTAGTC TACTCCAAGC AAGATGCAAT TCTGATTCTT CTTAGACGTC ATGGGTTCAC AGATTCTCAG TTCGGCGACA TGGTTGTGAG TTACCCACCA TTGTTTGACT TAGATGCTCG CAAGTCCATT GCTCCCAAGC TTAAGTTTCT GCGGTCTAGA GGAGCTACAA GTGTTGAACT CTCTGAGATC CTACCGAAAA TTCCTAAAAT CTTGGGAATG GAAGGGACTA AAACTGCCGG CTTATACTAT CATGTCTTCA AATACATGAC AACCGCAGAT AAGAGTGGAA ATTTAGCTCC GCTAAAGGGT GGTGGTATGC AGGGGAATGT CATGAGAAAT GTATGGGCTT TGAGAGAACT TGGTGTGCCT CAGAATCTCT TGTTATCCTT GCTTACATCT GATAACAAAC TTGTCTTTGG GAAAAGAAGA AGATTTGAAG AAACCGTGAA CAAGGTTGTT GGTAAGGGTC TTGATCCCAC GAAGCCAAAG TTTGTCGAGG CTCTAAAAGT TATTTACAAA ATGAGTGACA AAACAGAAGA AGAAGAAGAA AAGATCAATA TCTATAAGAG GTTAGGCTTT GCTGTGGGGG ATGTATGGTC TCTTTTCAAG AAGTTTCCAA GGATTCTGGG ACTCTCGGAG AAGAACATAT CAAACTCCAG TGAAACCTTT CTAAGCCTAG GATTCAGCAG AGATGAGTTC AAGATGATGA TAAAACGACA TCCTCCATGC ATTGCATATT CTGCAGAGTC GGTGAAGAAG AAGGCTGACT TTCTGATGAA GGAGATGAAA TGGTCTTTGT GCCCTAAGAT GCTGTCTTAC AGCATGGAGG AAAGGATTCT ACCAAGGTGT AACGTAATTA AAGCTTTGAT GTCGAAAGGA TTAATTGGAA GTGAATTCCC CTCTGCCGCC ACTGTGTTGA TATGTACAAA TCAGAGTTTC TTGAAAAAAT TTGTGAGAAA ACACGAAGAC AAGGAGCTTG TGGCTGAGTT GATGGCTCTT TTCACCGCCC GTGGTGATCT TGCTTCTTGT GTTAAATCAA TGGTGGCGGA GGAAGAAGAA ATACTAGAGC CTCAAGCTAA AGTGACAAGC AAGGTTTACT TTGATGTGGA AATTGGAGGT GAAGTTGCTG GAAGAATTGT GATGGGTCTC TTTGGAGAAG TTGTGCCTAA AACCGTTGAA AAATTTCGTG TCTTGTGTAC TGGTGAGAAA AATTATGGGT ACAAGGGTTC TTCCTTCCAC CGTATCATCA AGGAAGGAGG TGATTTCACC GAGGGAAATG GCACTGGAGG TATAAGTGTC TACGGTGCCA ACTTTGAAGT TGAAAACTTC ACCCTGAAGC ATACTGGAGC TGGAATCTTG AGCATGGCAA ACGCTGGTCC TAATACTAAT AATGGAAGCC AGATTTTCAT TTGCACCGTC AAGACTCCAT GGTTAGATAA CAAGCATGTT GTGTTTGGAC AAGTCATTGA AGGTATGAAG CTTGTGAGGA CACTTGAATC TCAGGAGAAA GGTTGCAGAA TCTATGCCTG CGGAGAGCTC CCGATGGAAG CTTGAAAACC ACCATTAAAA CCGGTGC |
| Length | 1777 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 19345515.. 19347778 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G62030.2 |
| Description | rotamase CYP 4 |
| TAIR curator summary | nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. |
| Alias | [CYP20-3][ROC4][cyclophilin 20-3][rotamase CYP 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg486707 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 16.9115 |
Ahg480210 | OBP3-responsive gene 4 |
| 26.9072 |
Ahg944415 | Pentatricopeptide repeat (PPR) superfamily protein |
| 32.8024 |
Ahg476280 | Rieske (2Fe-2S) domain-containing protein |
| 45.8585 |
Ahg489169 | photosystem II stability/assembly factor, chloroplast (HCF136) |
| 49.95 |
Ahg907857 | ribosomal protein L16 |
| 49.95 |
Ahg915009 | ribosomal protein L16 |
| 52.2494 |
Ahg925444 | ribosomal protein S8 |
| 52.6118 |
Ahg471142 | NAD(P)-binding Rossmann-fold superfamily protein |
| 53.4135 |
Ahg483178 | Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|