Detail



ID : Ahg939397

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|939397|scaffold_503588.1
Sequence
TAGAGTTAAT ATCGTGTGGA CCGATGACCC ACATATCAGA TATTAAACTG ATAAGAACAG ATACTACACT TGATCTTAGC CAAAAGGCCG AGAAAGGTAT GATATGCAAA TTGGGCTCGA CCTCTGATTT ATACTTGGGA GAAAAGGTAC ACAAATATCA CCTAAGCGAT GTGGGAGAAA AAGGTATTAA CAAAGAAATA GTCAATGACA TCATCAATCT GGAGATGCCA TCTGGTTCAG AAAGGACACG TCACAGCTCC GTCTTGCTTT TCTTATGGTC TTTCTTTGTA CTTTTGTCTA TGTTTGTTGT TTGCCTTGAT CGTATATGTA AACCAAGAAG AGCTGGTGAT AATTGAAGTT CAGTAAGAAG AGGATC 
Length376
Protein Sequence
Protein Residue
Map Locationscaffold_5: 19878701.. 19879048
Download Sequence
A.thaliana
AGI-codeAT3G57765.1
DescriptionU2.3; snRNA
TAIR curator summaryencodes a small nuclear RNA, which is a part of small nuclear ribonuclear particle (snRNP) and is involved in RNA processing such as splicing and polyadenylation.
Alias[U2.3][U2 small nucleolar RNA3]
Gene coexpression
MR
MR Locus Description
1 Ahg933385
8.94427 Ahg913545 Cellulase (glycosyl hydrolase family 5) protein
9.16515 Ahg936204
10.9545 Ahg897722
11.7473 Ahg347700 embryo defective 2739
16.4317 Ahg938457 Plant self-incompatibility protein S1 family
16.4924 Ahg318595 F-box and associated interaction domains-containing protein
19.0788 Ahg950240 Ubiquitin-like superfamily protein
20.1246 Ahg487504 Ubiquitin-like superfamily protein
21.166 Ahg946045 Uncharacterised protein family (UPF0172)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression