| Annotation |
|---|
| Description | jgi|Araly1|941624|scaffold_602168.1 |
| Sequence |
GACATATGCC TTGATCTAGT ATGAACGAAA GTTTCTCTGG AACGCCAAGA AGCATGACCC TCCATAGAAA TAGGATGAAA AGAGGAGCCC TTAGACGAAG GGCTAGGGAT ATCTCTGTTA TGCTTGTTGT GCTTGTTTGT GCAACCGTCG TCATATGGAC ATGGGATAAA ACTCCAACCT CGGCCTTTCT TCCACCTGAA AGTCACTATC TAAAGCTGCA ATCAGAAGAA AAGGTTGAGA GACTACCTAC TGCACTGAAT ACTGAAACTA AAGACATCTA TTCATTAGCT ACTCCATTTG TAAACAAAGA GGGAAGCAAA GAGGATTCAC CCGATAATAA AGATACAGAA GAAGAAGAAG AGAAACAAGT GGAAGAAGCT ACTGTAAGTG ATATGAATCA AGGAAAGACA CCAACTATTG GAGAGAAAAA AGTAGAACAA GTGGAACATG AAGTTATTGC AAGTGAGCCA AAATATCAGA AGACGCCAAC TAGAGAGGAA ATTAAATTAG AAAAGGTGAA ACATGAGGTT GCTATTGGTG ATGGCGAAGC TAAGAAGACA ACACATATTA AAGAGACTAA TTCAGATCCA GAGAGTAATA TTCTTGCAAC AGATGAAGAG AGGACTGATG GTAGTACTTC CACAGCTCGC ATCACGAATC AAGCTTGCAA TTATGCGAAA GGGAAATGGG TTGTGGACAA TCACCGTCCT TTGTATTCAG GATCTCAATG CAAACAGTGG CTTGCTTCAA TGTGGGCGTG CAGGTTGATG CAACGTACAG ACTTTGCCTT TGAAAGTTTA AGATGGCAAC CTAAAGATTG CTCTATGGAA GAATTTGAGG GTTCCAAGTT CCTGAGAAGG ATGAAGAACA AAACCCTAGC CTTTGTTGGA GACTCGTTGG GAAGACAACA GTTTCAATCT ATGATGTGTA TGATCACGGG AGGCAAAGAG AGGCTCGATG TCCTTGATGT GGGACCAGAA TTTGGGTTCA TAACTTCCGA AGGTGGAGCT CGTCCTGGTG GCTGGGCTTA CAGGTTCCCA GAAACTAACA CAACGGTCCT ATACCACTGG TCATCTACAC TCTGCGACAT AGAACCGCTC AACATCACTG ACCCCGCAAC TGAAAATGCT ATGCATCTCG ATCGCCCACC AGCGTTTTTA CGCCAATACC TTCATAAGAT CAACGTCTTG GTAATGAACA CAGGTCACCA TTGGAACCGA GGGAAGCTCA ACGGTAACAG ATGGGTGATG CATGTTAATG GCGTTCCCAA CACTAACAAG AAGCTAGCCG CTCTTGGGAA CGCCAAGAAT TTCACAATCC ACAGCACAGT TAGTTGGGTT AACTCGCAAC TCCCTCTCCA TCCCGGTCTC AAGGCATTCT ACAGAAGCCT TTCACCGAGA CATTTCGTGG GCGGGGAATG GAACACCGGA GGGAGCTGCA ATAACACAAC CCCAATGTCT ATCGGGAAAG AAGTTTTGCA AGAGGAGTCA AGCGATTACA GTGCGGGTCG TGCAGTGAAA GGTACAGGGG TTAAGCTTTT GGACATAACA GCCTTATCTC ATATTAGAGA CGAAGGTCAC ATATCACGGT TCAGTATCTC GGCTGCTCCG GGAGTTCAGG ATTGCCTCCA TTGGTGCTTG CCCGGTGTTC CTGATACATG GAACGAAATC CTTTTTGCAA TGATCTAAGT TTTCAAGTTA CAGAGAAA |
| Length | 1708 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 8339175.. 8341968 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G20680.1 |
| Description | TRICHOME BIREFRINGENCE-LIKE 16 |
| TAIR curator summary | Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). |
| Alias | [TBL16][TRICHOME BIREFRINGENCE-LIKE 16] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 19.5192 |
Ahg491566 | HOPW1-1-interacting 2 |
| 21.2603 |
Ahg934965 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 22.4499 |
Ahg484196 | Galactose oxidase/kelch repeat superfamily protein |
| 27.0185 |
Ahg481235 | nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding |
| 32.249 |
Ahg933190 | Pleckstrin homology (PH) and lipid-binding START domains-containing protein |
| 34.0294 |
Ahg927863 | cytochrome P450, family 87, subfamily A, polypeptide 9 |
| 34.3366 |
Ahg896178 | glutathione S-transferase zeta 1 |
| 40.9878 |
Ahg471034 | glucose-6-phosphate dehydrogenase 4 |
| 44.0227 |
Ahg484963 | |
| 49.6488 |
Ahg937750 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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