| Annotation |
|---|
| Description | jgi|Araly1|941911|scaffold_602455.1 |
| Sequence |
TTGGTGCTTT TCCTTATGCT ATGAAGCAGC TTGGACTCTC TGCTCCTGTT TATGCTACTG AGCCTGTTCA TAGATTAGGT CTCCTTACAA TGTATGATCA GTTTTTATCC AGAAAGCAAG TATCCGACTT TGATTTGTTT ACACTGGATG ACATTGATTC TGCTTTCCAG AATGTGATCA GATTGACTTA CTCTCAAAAT TACCATCTTT CTGGGAGAGG TATTGTAATT GCTCCTCATG TTGCTGGACA TATGCTGGGA GGTAGCATCT GGAGGATAAC AAAGGATGGG GAGGATGTTA TATATGCTGT TGACTACAAT CATCGGAAAG AAAGGCATTT AAATGGAACT GTTTTACAGT CTTTTGTTCG GCCTGCTGTT CTGATAACCG ATGCATATCA TGCTCTTTAT ACCAATCAAA CCGCAAGACA GCAAAGGGAC AAAGAATTTC TAGATACCAT TTCAAAACAT CTTGAAGTTG GGGGAAATGT TCTATTACCC GTGGATACTG CGGGTCGAGT CCTGGAACTT CTCTTGATAC TTGAACAGCA TTGGTCACAA AGAGGTTTCA GCTTTCCCAT TTACTTTCTC ACATACGTGT CATCTAGCAC AATTGACTAT GTTAAGAGTT TCCTCGAGTG GATGAGTGAC TCCATTTCAA AGTCCTTTGA GACTTCACGT GATAATGCCT TTCTATTGAG TCTCGAAGCA GGTTTTGCTC GGGAGATATT CGTGGAGTGG GCAAATGATC CCAGAAATTT AGTCCTCTTT ACTGAAACAG GGCAGTTTGG CACTTTAGCT CGCATGCTTC AGTCAGCCCC ACCTCCCAAA TTTGTTAAAG TCACCATGTC AAAGAGGGTT CCTTTGGCTG GGGAAGAGTT GATTGCGTAT GAAGAAGAGC AAAACAGACT GAAAAGGGAA GAAGCTTTGC GAGCTAGCCT CGTCAAAGAG GTGGAAACAA AAGCTTCCCA TGGATCCGAT GATAATTCAA GTGAACCTAT GGTCATAGAT ACCAAGACTA CTCACGATGT TGTTGGTTCT CACGGGCCTG CATATAAAGA TATATTGATT GATGGATTTG TTCCCCCATC TAGCAGCGTA GCTCCAATGT TCCCATTTTA TGACAACACA TCTGAATGGG ACGACTTTGG GGAGGTTATC AATCCAGATG ATTACGTGAT CAAGGATGAA GACATGGACC GAGGAGCAAT GCATAACGGA GGTGATGTGG ACGGAAGGCT TGATGAGGCA ACTGCTAGTC TCATGCTTGA TACAAGACCT TCGAAAGTCA TTTCCAATGA GCTCATTAGG ATAGGTTTTA CAAGACATTT GAGAGGAGGA TTGTTTACTC CAAAGGTAGC TTGTTTCAAA GAAGGTGTTA TGTTTGTTAA GAGGAAAAAG TATTACTACT CTTTAAAGTT CTATCATGAA AAGCTGATCA AGACATTCAC CGAGATGCAG AGGTTGCGGG TTCTGTATGG AAAGAAATTG GGCAATAACT CAAGACTCCT CCTTTGGTCA GAACAAACAC AAACCGGGAA TCTAAAGCTG CTAGACCTTA ATAGAGTTCC ATCTGAGGAA ATGGATAGTG CTACATGTAG ATTCAAAACT CCCAATGTAG TGAAACCTGT GGAAAGAAAT AGAAGGAAAA GTTAAACCTT CCCTCGCAGT GGCAGC |
| Length | 1676 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9712772.. 9716782 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23880.1 |
| Description | cleavage and polyadenylation specificity factor 100 |
| TAIR curator summary | Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. |
| Alias | [ATCPSF100][CPSF100][EMB1265][ESP5][CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100][cleavage and polyadenylation specificity factor 100][EMBRYO DEFECTIVE 1265][ENHANCED SILENCING PHENOTYPE 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.245 |
Virus1770 | |
| 60 |
Ahg479482 | cyclin-related |
| 67.4092 |
Ahg928751 | 3-phosphoinositide-dependent protein kinase |
| 78.5875 |
Ahg919631 | copper/zinc superoxide dismutase 1 |
| 90.3161 |
Ahg940648 | translocase inner membrane subunit 17-3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|