Detail



ID : Ahg942127

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|942127|scaffold_602671.1
Sequence
TGATAGTGGA TCTCACTTAG CAATGAAGTC AGGAGGATCA TCTACATTGA ATCCTTACGC AGCAGCTTAT GTACCACTCT CGAAAAGAGA GGGTTCTTTG GGTGATACAA AGCCTGCCAC ACATCATCAC GTGCAGCAGC AGCAGCAACA TCATTATGTA GCTCATGGTT ATGGAGTCCA AGGGATGGGA AGTTATCCTG GCTCTCAAAT GTCGCCTAAG AAGTCCTCTG ACATGGTATA CAATCATCAG TTGAAAGATG AGGATTTGGA GATGGACATG GATATTGAGT ACCTTTTAGT AACATTCGCT GGTCTTTCAC ATGAGTCTAT CAATGATGTT TACTTGGCTA ACAGTTGTGA TCTTGATGCA ACTATCGAAA TGCTGAACCA GCTAGAGATT TACAGTACTG AAGCTCAGGA ATACCTCCCA GACACACTGG ACATTGGCGA TGTACCTGAG ACCATCACCG AGCCTTCAAC CTCGACAGTT TCGAAACAAA AGAATGAAGC GAATGCATCA TCATCATCAT CATCCTCGGG TATCCACAAC GCACCTGTAT CCTCCTCCTG ATTTGATGAG TCCTTAAAAA AT 
Length592
Protein Sequence
Protein Residue
Map Locationscaffold_6: 10822119.. 10822801
Download Sequence
A.thaliana
AGI-codeAT5G25540.1
DescriptionCTC-interacting domain 6
TAIR curator summaryExpressed protein contains PAM2 PABC interacting domain.
Alias[CID6][CTC-interacting domain 6]
Gene coexpression
MR
MR Locus Description
7.74597 Ahg479007 Ubiquitin-like superfamily protein
8.3666 Ahg944648
8.60233 Ahg945271 vacuolar protein sorting 26B
11.3137 Ahg494889 Thioesterase/thiol ester dehydrase-isomerase superfamily protein
12.49 Ahg911261 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
18.1108 Ahg484485 actin related protein 2
18.303 Ahg888778 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
22.3607 Ahg481108 GRAM domain family protein
31.1127 Ahg481908 alternative NAD(P)H dehydrogenase 2
31.1127 Ahg915235 Homeodomain-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression