| Annotation |
|---|
| Description | jgi|Araly1|942753|scaffold_603297.1 |
| Sequence |
GTAACAAGAA CACGCGCGAA AGCTATGGTA GGAGCTTCAA GAACAATCCT ATCCCTATCT CTATCATCTT CCCTCTTCAC TTTCTCCAAA ATCCCTCACG TTTTCCCATT TCTCCGCCTC CACAAACCTA GATTCCGCCA CGCTTTTCGT CCTCTTTACT CCGCCGCCGC AACAACTTCT CCGACGACGG AGACGAATGT GACAGATCCG GATCAATTGA AACACACGAT TTTGCTTGAG AGGCTTAGGC TTAGACATTT GAAGGAATCA GCGAAACCAC CGCAACAGAG ACCGAGTAGT AGTGTTGTTG GTGTAGAGGA AGAGAATAGT ATTAGGAAGA AGAGTAAGAA GTTAGTTGAG AATTTTCAGG AGCTTGGGTT AAGTGAGGAA GTTATGGGAG CTTTACAAGA GTTGAATATT GAGGTTCCTA CGGAGATTCA GTGTATCGGA ATACCCGCGG TTATGGAACG GAAGAGCGTT GTTTTGGGTT CGCATACTGG TTCTGGGAAG ACTCTTGCTT ACTTGTTGCC TATTGTTCAG CTGATGAGAG AAGATGAGGC AAACCTTGGT AAAAAAACTA AGCCTAGGCG TCCGAGGACT GTTGTTCTTT GTCCTACAAG AGAATTATCT GAGCAGGTTT ACCGTGTGGC GAAGTCCATA AGCCATCACG CGAGGTTTAG ATCGATATTG GTTAGTGGTG GTTCTCGGAT AAGACCACAG GAAGATTCTT TGAACAATGC AATAGACATG GTTGTTGGAA CCCCTGGTAG GATTCTTCAG CATATCGAAG AAGGAAACAT GGTCTATGGA GATATCGCAT ATTTGGTGCT GGATGAGGCA GACACTATGT TTGATCGAGG CTTTGGTCCC GAGATTCGTA AATTCCTTGC CCCACTGAAT CAGCGTGCCT TAAAAACCAA TGACCAAGGA TTTCAAACTG TCTTAGTGAC TGCTACTATG ACAACGGCTG TTCAGAAGTT AGTCGATGAG GAGTTTCAAG GGATAGAACA TTTGCGAACA TCAACATTGC ATAAAAAGAT AGCAAACGCT CGCCATGACT TCATCAAGCT TTCAGGTGGT GAAGATAAGC TAGAAGCACT TCTACAGGTT CTCGAACCCA GCTTAGCCAA AGGGAGCAAG GTGATGGTCT TCTGTAACAC TTTGAACTCC AGTCGTGCCG TTGATCACTT TCTTTCTGAA AACCAGATCT CCACTGTAAA TTATCACGGT GAAGTTCCAG CAGACCAAAG GGTTGAGAAT TTGAAAAAGT TCAAGGACGA AGAAGGAGAC TGTCCCACGC TAGTGTGCAC GGATTTGGCT GCGAGGGGTC TGGACCTCGA CGTTGATCAT GTAGTCATGT TTGATTTCCC AAAGAACTCT ATTGACTACC TTCATCGCAC TGGAAGAACA GCTCGGATGG GTGCTAAAGG AAAAGTGACA AGTCTAGTGA GCAGGAAGGA CCAAATGTTA GCAGCACGAA TCGAAGAAGC AATGAGAAAC AACGAGAGCT TAGAATCACT CACCACTGAT AATGTGAGGA GAGACGCTGC AAGAAGCCAA ATCACTCAAG AGAAAGGAAG AAGCGTTAAG CAGATGAGAG AAGTAAGCAA GCAACGAATC TCCAGAGACA AACCGTCGTC ATCTCCTCCT GCAAGATTAA CAGGTGGGAA GACACCCGTG AGAAAGTCAA GTTCAAGTTC GTTTTCAAAA CCCAGAAAAG CATCATCTCC TCCTGAGAAA TCTTCAAAGC CGAAAAGAAA AATATTAAAA ACGGTTGGAT CCAGATCGAT TGCTGCGAGG GGGAAGACGG GTTCAGATAG ACGACCAGGA AAGAAACTAA GTGTTGTTGG GTTCAGGGGA AAGTCTTCTT CGGCAAGAGC CTTTTGATTT ACATTCTAGA AACTTGA |
| Length | 1907 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 18639207.. 18642401 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G09730.1 |
| Description | RH39 |
| TAIR curator summary | Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. |
| Alias | [RH39][RH39] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg937391 | translocon at the outer envelope membrane of chloroplasts 75-III |
| 15.9687 |
Ahg491238 | SWIB/MDM2 domain superfamily protein |
| 16.4317 |
Ahg493615 | Ribosomal protein S3 family protein |
| 17.5784 |
Ahg938279 | Pentatricopeptide repeat (PPR) superfamily protein |
| 17.6068 |
Ahg942027 | Protein of unknown function (DUF3411) |
| 18.1659 |
Ahg485806 | fructokinase-like 1 |
| 18.5742 |
Ahg475104 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein |
| 19.1833 |
Ahg336171 | toprim domain-containing protein |
| 20.199 |
Ahg476563 | purine biosynthesis 4 |
| 20.2978 |
Ahg488823 | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|