Detail



ID : Ahg943312

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|943312|scaffold_603856.1
Sequence
ACCTAAATTG TGTAGTAAAA ATGTTTAATC CGCATAATAA GTCTTTTCTT CTAAAGAAAT CAGTGAAGAC GGCGTGGTGT GCCGCTCACG TGCAAAATCT CCTCGAGAAG AGTCAATACA TTGCCACAAA CATCCCCAAA ACAGTTGATC ATATACTGTT ACATGAGGTA CCAATGTCCA TAAGAATGTC AGGTCACATT CTAATTGGAG TTGTACGAAT ATATTCAAAG AAACTCGATT ATCTTTCTCA TGATTATAAT CTCCTTAGAA GTTTGGTAGC TAAACCAGAG GATTTGAGAC AGGCACAGTT TCATTTAATA ACTTTGCCTC AAACACTAAA TTTGGACGAG CTCGACTTGG AGGATGACGA TACACTTTAC ATGGAATTCG AAACTCATAT CGGGAGTGAG GAAGATATCA CTCTCTCTGA TCAAATTCCT ACAGGCATTG ATCCTTATGT TACTATAACA TTCGACGACG AGGATATCAT TCCAGAATCT ATCCCGATGG ATATCGAGAT TGAGAAAAGG CGTGATGCTG CACGCGATTT AAGCCCTGCG TCTCATCCAC CATTTGCTGC ACAACAACAT AGTGTCAGAG TTGGATCCTT ACATGAAAGT TTGAATGATA AGGAAGCCAC TATTCATAAT ATTGATGAAG AAGTGTTAAA TTCTAGAGGG CATTCCATGT TTGAGTTTCG CTTAAGATCT CCAAGTTTTG CTGGTTCTGA GGAAGAACGT GCAGATTTTG TGCATCCATC ACCTGAACTG GTTCTGCAGC CAAGTACTCC TCCTCCCACA CCACAAACAA GGCCAAGAAA GAGGAAGCAC TATGATAAGA CCTATGTCTT ATTAAGTCAC AAGATCCTGA GAAAAAGGCT TGAGGATCCT AGTAAGACTG TTCGTAAGAG AAAGAAGTTG CCTTCATCTA AACTAGGTTT TTGGAGACTT GATAACCAGT CAAAGAAGGA TCAACTTTTC AATGAGCCCT TGTTTACTGG CTTCTCAAAT GTTTTACGCA GTGTCTTTGA AAAGGACTAT GTAGCTTCAA AACCATATCT TGCTGTTCCT GATGAAACTA TTCCAGAACC TGCATCATCT CCAACTCGAG AAGCTGAAAC AGAAATTAAC CCGGCCTCTC CAGTTCCTGA TTCTACTAAT CGAGACAGTA CAGTTCAGCG GCCTCCACAA CAGGAAACTG AAGATGTCCA AGGCGTTGCA GGTCCTCAAT CCGCGCGTGC AGAGTCTGTA GCAGCAGAAG CACAATCTCC TCAGCCATCT AACAATGACG ACATAGAAAT CGAACATTTC AGGGATGGTG GTTTCCATGA TTACATGCCG TCACCACCTC CACGATCCTC ACCTTTTAGA ACCAATGACT TCACCACTCA GCCTAACACT TGGGAGACAG AATCTTTCAG AACAGAGACT TCAACTTCCA CAAATCCAGA GAATCTACCT GGACTAAACA TCCCTGAGTA CATGCCATCA CCACCTTTAA GATCTTCGCC TTTTAGAACC AACGACTTCA CCACTCAGCC TGAATCATTG GAGACAGGAT TTTACAGAAC AGAGCCTTCA ACTTCGACAA TTCCTGAGTC CTCCTCACCT GGACTAAAAA CCCCGGGGCT TCCAACTATT TCTGAAAGGA TGGACGAGGA ACTTTATTTC CTTGAGGACG GTGGCAATAG CCAGGTAAGA TCACCAGCTA CTCAATATTC TGATGCTTTG CCAGGGAGGA CAAGAACCGT GGCTCAGTAT CTTAAAGAAC GTTGTTCAAG TAGTCTCACT TCAAGCCATG CTTCTGGAGA TCTAAGTTTG AACAAGATCT TGGCAGGAAA GACAAGGAAA ATAGCTGCTC GAATGTTCTA CGAGACACTG GTATTGAAGT CTAGAGGACT TATAGATATG AAACAAGACC AACCCTATAG CGATATCTCT CTGAAGTTGA TGCCTGCCCT TTTCTCAAAG ACTCAACTCT GAATAAACAA TGCTCACTAT ATCCTGT 
Length2007
Protein Sequence
Protein Residue
Map Locationscaffold_6: 21526418.. 21529348
Download Sequence
A.thaliana
AGI-codeAT3G59550.1
DescriptionRad21/Rec8-like family protein
TAIR curator summaryEncodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.
Alias[ATRAD21.2][ATSYN3][SYN3][SISTER CHROMATID COHESION 1 PROTEIN 3]
Gene coexpression
MR
MR Locus Description
4.58258 Ahg930506
6.48074 Ahg923070 cytochrome P450, family 96, subfamily A, polypeptide 8
14.3875 Ahg923687
16.4924 Ahg491753 Eukaryotic aspartyl protease family protein
20 Ahg475213 serine carboxypeptidase-like 32
20.7364 Ahg942378 RING/U-box superfamily protein
24.3721 Ahg946996 DNA (cytosine-5-)-methyltransferase family protein
30.6268 Ahg470621 Fatty acid desaturase family protein
36.4692 Ahg932428
42.4971 Ahg951973
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression