Detail



ID : Ahg947226

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|947226|scaffold_703455.1
Sequence
GAGGCGGAAC TTATGAGGTC ATGGAGACCC GTCCACGTTC TGATCTCTAT GCCAATCTCT CTGCTCTCAA GAAGCTCGAT GTTATGTTGA TCGATATACT TGTCGCTTTC TCCGATACCG AATTCTGGTA TACTAATCGT GGCATAGTTC TTGGTGAATG TGAAAAGGAT TCTTACAATT CCCGAGCTCC ACCTAACGGT TTGTCAGAAG AGGCCAGGAA GAAACTGCAG CAGTGTCGGG ACTTTGCTAA CCAGATTCTC AAGGCTGCAT TGGCAATTAA CAGCGGCGTG CTTGCCGAAA CGGAGATTCC CAACCCTTAC TTGGAGACAT TGCCCAAGGT ATGTCTTGAT CTCTCATCGA AACATCAGAC TCTTGAAATC GCCAACCAGA TTGAGGCGAC TGTGCACGTT TGGAGACAGA AGAATGGGAG GAGACACAAG AAGAAGGCGA AACTAAAGCT GTCTGTTGGA GATACAATCC AAGTCCCACA TCGGAAGTTT GATGGGACAA TCAATAATAT ATAAAGGGTT AGGGCCAATC CACT 
Length544
Protein Sequence
Protein Residue
Map Locationscaffold_7: 17742409.. 17742997
Download Sequence
A.thaliana
AGI-codeAT4G38430.1
Descriptionrho guanyl-nucleotide exchange factor 1
TAIR curator summaryMember of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.
Alias[ATROPGEF1][ROPGEF1][ROP (rho of plants) guanine nucleotide exchange factor 1]
Gene coexpression
MR
MR Locus Description
19.1833 Ahg326109 Glycosyl hydrolase superfamily protein
27.1293 Ahg908045 DNA primases;DNA primases
46.1628 Ahg921700 ENTH/VHS/GAT family protein
49.3153 Ahg492665 root hair specific 14
60.1997 Ahg921896
70.7107 Ahg924832
75.9342 Ahg945462
80.8332 Ahg474038 glycosyl hydrolase 9C1
86.0755 Ahg912066 AGAMOUS-like 104
87.7496 Ahg892041 cation/H+ exchanger 26
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression