Detail



ID : Ahg948513

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|948513|scaffold_800400.1
Sequence
ACCAAACTTA AGATTTTCAA GTCATGGCGG GTCAAACCAT GGTAAGAATC AGCTTTGATA GCTCGGAAGA GAGACTACGG TGGTCCTTTG TCCCCCATCT CTCTGCGGCA TTTGGCCGTA AAGGCATCTC TGTGTCCACA AGTATGAACG ATGAGTTTGT AGCTTCCTTG TTGGTTTTTT CTGAGAAATA CGTGTCTTCC AAGGAATCTT TAGATGAAGT CGTTAAGACT ATCCAACAGA GACATGACAA AGGCCATGTG GTGGCCACTG TATTTTATGG AGTCAGCAGG TCAGATGTGC AAGAACTGAA GGGGAATTTC GGAAAGGTGT TACTTGAAAA TGGGGCTTCA GATCAAGTAA CGCAATGGCA CAACGCTCTT GCGGAAATAG CAAGCTTACC TGGCTATGAA GCAAGCAATA CTCAAAGTGA TTACGAATTT GTCGAAAAGA TTACGAGAGA TGTTTATGAG AAGATCTTTC CAAAGGAACG AATAGGAATC TACTCAAGGA TGCTGCCAGC TATAGAAAAC TTGCTATGCA AGCAACCATG GGGAGTTAAA AGCATAGGGA TTTGTGGTAT GCCAGGCATA GGCAAGACGA CGCTTGCTAA AGCAGTCTTT GACCAAATGT CTGGTGGCTA TGAAGTCACT TGCTTCGTCG AAAATTTTCA TGAAGCCTTT CACAAGAAGG GACTTTACGG TTTGCTGCAG GAACATTTCA AGAACCTTCC AAACAAAACA CTTCAACAAA GAGTTCTTGT TGTTCTTGAT GATGTGCGAA ACCATCTAGA TGCAGAGTCT TTTCTCGCTG AGCTTTTCTT GTTTAGCCGT GGAAGCCTGA TCATAGTAAC CACCAGAGAT GAGCAAGTGC TTTCTCAGTG TCGAGTCAAT CAAACATACA AAGTTGAAGG ATTAAACAAG CAAGAGTCTC TGCAACTATT TTCCTTGTGT GCATTTGAAA GAAATGTGAC AGACAAGAAT CCTCTTCCAG AGCTTTCTAT GAAGTTGATA GAACACGCTA ATGGAAACCC TTTAGCTTTA AGATTATACG CCGAAGATAT GTCCTCACAC AAGAAGCTGA ATCAAAAGGA GACTTTGTTC CTCATGCAAG CTCCTCCACA TCAGATTACG GAAGTAGTCA AGAGTAGCTA CAATGCACTC AGTGACAACG AAAAGAACAT ACTTGTGTAT ATTGCTTATT TCTTCATAGG CGCAAATGTC GATGATGTAT CCAAACTACT TGAAGACCTT GGTTTCTTTC CGGATTTTGG AATCGGCCGG CTTGTGGAGA ACTCTCTGGT GACTATTTCA GAAAACAGAT TTGAAATGCA TAGCATGATT GAGGCAGTAG TCCGGGAAAT CGGGAGGTGT CATAGATTCA AAATCAACAA AGACCCTAAA ACAAGTTTCA AATGTGTATT GGGCACTAAA GATATCGAAG CGATGTCTCT TGATGCATCT AACTTAAACC CAGATGTCAA ACTTTCTTCA CTTGCATATA TGTATAACCT TAGATTCCTG AAGATTTATT ATTCTGACCC TAAAAACAGT CGCAAGGCTC TCGAGTCTTT GCCCTGTGGG CTTAGACTTC TTCATTGGGA ATATTACCCT TTGCAATCTT TACCACAAGA TTTTAATACA AGCAACCTTG TTGAGCTCAA TATGCCTTAT AGTCAACTCC AAAGACTTTG GGGAGGAACC AAAAACCTCA AGATGCTGAA GAGGATCAAC CTTCGCCATT CAGAGAAGTT GTATGAAGCT GAGGAACTTT CAGAAGCTTT AAACCTTGAG CAAATTGATC TCAGTGGCTG TAAGAACTTG CAAAGTTTTC CAGCCATTCA TCAATTGCAA AAACTCCAAG TTGTTGATCT CTCTGGTTGC ACACAAATCA AAAGTTACCC TGAGTTTCCA TCTAATGTCA CATTGAAATT CCAGGGAACT ACCATTAAGA AATTCTTCCC TCCAGTCACA TTCACCATCA AGAGCTTACT GGAGCTCTTC GACAATCCTT CTGGACAACA AATCTTTGAC GACTTTCGGA AACTCGGAAG CTTCTTGAGT AGCCAAGAAA GGATAACAAA TCCAGATATG ATGGAATCAC CAACCATATT AGCTATGATA TTGCAGAAAG CAATAAAAAG AACCTCAAGT CTTCAGTTGT AAGTAGCCAA ATCGAAGGAT AC 
Length2182
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT5G17890.1
DescriptionDA1-related protein 4
TAIR curator summaryEncodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.
Alias[CHS3][DAR4][CHILLING SENSITIVE 3][DA1-related protein 4]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg475740
3.4641 Ahg493864
4.47214 Virus1005
5.47723 Ahg935222
12.3288 Ahg931230
14.8661 Ahg494284 Plant invertase/pectin methylesterase inhibitor superfamily protein
14.9666 Ahg496000 NAD(P)-binding Rossmann-fold superfamily protein
20 Virus1926
21.6333 Ahg357347
26.1534 Ahg924761
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression