Detail



ID : Virus3873

     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
DescriptionUgandan_cassava_brown_streak_virus|plants|ssRNA
Sequence
AAAAATAAAC ATGACATAAG AATACATAAA AATACATCGC ATACAAACAC TGTGCATTCA AATTTGTGAG AAAGCAAGCT GTTACGAAAG TTTACGATAC ATTTTTATAT ATTTATAGCA CTGAATACCT GCAGATGTCG ACTATCCAGC TATTCAAGAC TATCACCTTT GGTTCCTTTG AGCCTATCAA GCTTGATGAA GAGAACAACA TTATAGAGAA AATTCCAACT GATCTTCTGG CAGGAAATGA TGGCTCTGGT CCTGAGGGGC AATCAGAACA GAAATACCAT AGGAAAGAAA GCGGTGAAAG TTGGCGGAAA GTAACTGACT TATATTCTGT AATTGGAAAT TCTGTTTACT GCCGCAGTTA TGTAGCAATG AAAAACTTCC TCAATGACAC AAAGTGGGGA GGTCTTTTCA AGAATAAGAA GGGGCAAGAA TTAAAGGCTG CTGCAAGGCT CAGAAGGGCT ACAAGCTATG GATTCATGTA TGATCCAGTT GCTTGTGCCT TTGAATGTCC TGTTTGTAGA ACAAAAGCAA CAGCATTGGA AGCGTTTACA AGCGATTGTG ATCATTGTTT TGAAATCAAG CACATTGATG ATGATAGGTT CGTTCAGACT GAAACAAAGT TTTATCCAAT AAATCCTATT GAACTGGATG TTGAGGATAA CTTAGTGGAA GCTGCATCGC TTGAGTGGTT GGGAAGTGAT GTGGAAGAGA GAGTTGTAGA CAGGGTTTTA CTACTTGAGG ATAAGGAGAT TCGTGTTACG AAGAAAGCCC TAATTAAAAG AAGAGGTGAG ACAAGACTCG TGGCAAATGT TTCTGATCTT ACCAGGAAAT TGACTGAAAT TTGTTGTGAG TCTGGGATTC CTATCATTGA TATTGATAAT AGCAAGAGGA AAGCCATTCC AATGGTTAAA CTCAAGCATA TCTTTGGGAA AATTGAGTGT GATGACATGT TTGAAGAAGA TCGGTATTTC TTGGAGCATA AAAATGCAGG AAAAATTTTC CGATCATGCG AGAAAATTAC TTATAGGATG ATTCGTCCTG GATGGAGCGG AGCGATCATT TTGAGAGACA ATGTTCAGGG AGAGGATCGT GATAAGTTTG ATTTTATCAA CGACATTTGT GTTGTTCAAG GGAAGAGTCT GATTAGCAAT AAAATTGAAA ATGCCATGCG CGTTAAGACC AAAACAGAGG TGGACTTAAT TGATTTATAT TCTTTCAATC TTAGTTGGGC AAAATCGAAA GATAAGTTCA TTAAGCACTT TGAAAGTGAT ATAACTCAAT TAGTTAGATC ATGTTGCACT CCTAGTACAT TGTGGTTATA CGCAAGGAAA GCCAGGTTTT ACAAATTTGT AGATTACATG ATCTTGAAGG GTAGTCCAAT AATTGATATT CTAGTTAAAA TGGAGTATGT TGGCAAGCAT TTGGACATGT TCAATAGTGT CGAAGATGTG TGCACTGAGT ATTCTCATTT TATGAAGGAG ATAATTAGTG AAACTGTCAA CGATAAATTG GATCCAGATG TGTTGCGCGT TAGAAATTTG ATTAGAGCGC ATTTTGAGTC AGTCTTAGAA TATAACAAGT ATGAGTTAAT AGATAGAATA ATTGAGAAAA AAACACAGTT AGAAGCACAA GAAATTATGT CTCGCGAGCT CATCAAACAT CAGTACGGAG AGTTATTTTC TTGGCGCGAA CGCTTGTGTT TGAAGCTAGG TATAGGCTCA TCAAATCTCT ATACGTACTG GGTGGAACGC GAGGAGAAAC AATCAGAGAA ATCGAGTGCA ATCTCTTGCA TCATTTCCAA ACCGGGAATA GAGATGTTGA TCAATTGGAT CTCAGAAGTG TGTAAGAGTA AATACCATAG TCTTGTAAAT TGTGTCGATA GTGGTATTTT ATTCTTGTGG TCTAGAATAG TTCATTTAGC TAGAGTTTCA GTTTATGGTT ATTGGAATCT TTGGTTTAGA CAAGCGATGT GTGTGTTATT CATCTTTTTA GTTTCGAATT TTTCTAGTAA AATAGTTGGT TATCTTAAGA AATTAATTGT GAGTGAGAAG AAGCTAGCAA TAAAGAATGA GGAAGGTTTT GTTGAAGTGC AAGGCCGAAA GGAAGAGTCT TTTGTCTTAA AATGGTGTGC CGCTGCGACT CTGTTTCTTA GTTTCCTAAA CTATGACTGG GCAGTTGGAT GTGTGTCAGC CATTGGAAAG ATGAAAACAA TATTTAGCGC ACTAGGTCCA GATTTCATAG AAAAGCAAGA TGGAGATGAT GATCTAAAAT TCACAACATT TGAGGTTGAG ATTCCTGGAG ATTCTAGAAG TTCAAGTGCA CAAACATTTG GAGAATGGAT TGAGCATTGT ATTAAATACA ATCTAGTTTC GATTGAGCCA ACCACAAGTG GACCCATGTT AACTTTGGAA CGTGGGAAAG CGAATGAATT AGCTGATCAG ATAAATTGTT TGAATGCAAC AGATATACGT GTTCACGGTG GAGTCGGAAC GGGCAAGTCA ACAACTCTAC CATATGAGCT AATAAGGTAC GGGGCAGTCC TTGTGTGTGT GCCTACGAGA GTTTTGGCAA ATGCACTGCA TGAGTCATTC ATGAGCTTGT TTGGTTTTGA TGTATCATTA GCTTATCGGG GTCGAGTCAG AACTGGTTCA AAACCAATTA CTATCATGAC ATATGGGTAT GCCTTGAATC ATTTCCATCA CAATCCCAGG AATTTAGCAC AATTTCAATT CATAATAATG GATGAGGTTC ACACATTTCC TGTTCATTTG AATCCTTTAT TCTCATTGTT ACGTGAGTTG AGCCCTGACA AGAAAATAAT TAAGACATCG GCAACGCATG TTGGCCACAA CGTTGATTTA TCAACTAATC ATAAAGTTGA TATACACACA CTTGAGGTAA TGGATGTCAA GAAATGGGCT GAATTGCAGG GAACATCTGT GTTTGGTGAT GTTACAAAGG AGTCTGGAAA CATTTTGGTG TTTGTTGCAT CATATAGGGA TGTTGATGTT TGTGCAGATA AACTTAAGGA CAAAGGATTT CCTGTAATTA AAGTTGATGG AAGAAATTTC AGGAAAAACA CAGAAGTTCA GAAAATGGTG GACGGACTGC AAGGAGAGGT GAAGTTCATT GTCGCAACTA ACATCATCGA GAATGGTGTT ACCCTTGATG TTGATGTAGT TGTTGATTTT GGCGAACGCA TAAGTCCAAA TTTATGCTCA GAAGATAGGT GCATTCTAAT GCAGAGGCAA AGAATTTCAC AAGCTGAAAG GAAACAAAGA TTTGGGAGAG TCGGGAGAAT GAAGAGAGGC TCAGTGTACA AATTTGGAAG GGAGACGTTG CCTGATTCAA TGAGAAGTAG AGTGGGGTCA ACAGAGAGTG CATTAATTTG TTTTGCTTAT GGTTTAAAAC CAGTAGTTGA TGATGTGGAT ATAGGGTCAG TTAGGAGTGT TACACAGAGG CAAGCTTTGA CAGCATCTAT GTTTGAAGCG AATTATATAT TCACAGCTCA CTTAGTAGAT AAACAAGGTT TCATGCCGAG ACCAGTTTTT GAGTTGATGA AAAGTCTTTT GCTACATACT GATGCGGTAG GGGTCAGTAG TACGTATTTA GCTACTAATA TGAGTGGTTG GAGAAGGTTG AAAGAGTATA TTAGAATTGA CGATAGCTCA CGTCATGTGC AAGAAGTTCA AATTCCGTGG TACTGCTCGG ACATGAGTGA TGATTTTATC GTTAAGTTAG CTGAGTGTGT CAAAGCTGCA AAGCCAAAAT CGCAGTGTGG TTACAAAGTA GATAACGTTG ATTTTCATAC CGTAGCTCAT AAAATAAGTA TAGGAGAGTC AAATATAGAT GAGTCAAGGG CGTTAGTGGC AACAATTTTA GATGAAGTCA AGCAGTGGAG AGATGGTATT ACATACCATT CAAGTACACC CAGGAATAAG AGTTTGATGA GCTTGATGGT TGGGTGGATT CCAAGAAAAG CAGAGAAAAC AAAAGAAATT CTTGACAACC GAATTCAGCG GCTCGAGTTA CTCTTGAACC AGTTAAATGG AGTTAGAGGA ATCGATGATT ATGAATCTCT TGTTCGGTTT TTCAGTGAGA ATCCTCATTC AGCAGAATAT CTTGAATCAC AATGTGCTAG TGATTATATT GAGGAGAAGG TTATGAGTGT TAAAAGAAAT TACGATAAGT CACTAATTCT TGGTGTGGTT GGTCTAGCTG TTGCAACAGG CACGTTTGCT TACTGGTATA TGAGGAGAAG TGCTGCAGTT GAACTCGTTG AAAAACAAGC GAAACACAAG TACAACAGAG ATAAGCGAAC AGGAAGATTG ATGTTTGACA TGGACGATCA AGAGACTTAC GAGAATTTTG GTCCTGAGTA CACAGATGAT GTTATCTCTG CCAAGATGAC AAAAGCTCAA AAAGAAAGGG ATTCAAGGAA GAAAGGATGG AAAGCGGGGA AAATAAATCG ACCTATGAGG GTATTTCATC AATTGTATGG AGTCAATCCT CTAGAATTCG ATGAAGTTGT CATGAGAGTT GGTAAACTTG AGACTGAACC GTGGGATGTG AAAGAATTAA ATGTTGATGC AATGATGATT GAATTGGATG ATGATTATCA TATTTTGCGG GATGATCGCA TGTTTGGGAA GAAAGTTTCT TTAGCTTTCA GGAAAGAAGG GGCTGATGAG GAAACAATTG TTAATTTGAC GCCACATCGG TCAAAAATGA CGAGCAGCAT GAGTTTAGCC CCAATGGGAT TTCCAGAAGA AGAAGGTAGA TGGAGGCAGA CAGGTGCACC ACTGATAAAG AAGACTGAAA AGGAAGATGA AGTTGAAGTT CAAGTTGCAA AACCAGAGCT AACAAATCCT TATGATCATA TCTTGGTTAG ACTTGGTAGA GCGCGTCTTG GGACTCGTGT ACTAAATTGT TTCTTTCATG GGTCAAAATG CGTTATTCCA TATCATTTAG CTGAGAAAGG AGATAGGGAA GAATCATTAG TCATTGCAAC TACAAGAGGA CAGTTTGATT TTGGACCAAT GAAGAATATC AAGTGCAGGA AGATCACAGA TTATGATATT ACTATTTGCC CATTGCCGAA TGATGTTCAA CCATTCCGTT CAAAAATTGT AATGCGTGAA CCAAAGTTGG GAGAGGAGGT GGTTATCGTG TGTTTTACTA GAATCAATGG GAAGATCGTG ATGAAAGTTA GTGACAAGAG CACCACATAT CCTGCTGGTG GACAGTTTGC GCACCTTTGG GCGTATAAAT ACGATGGCCA ACCAGGAGAT TGTGGAGGTC CAATTGTTGC AACAGTTGAT CAAAAGGTGG TGGGGTTCCA CAGTGGTGTG ATTAGAAACA GTAGAGAGGA GAAACTGCGA GCTGTATACA CTCCAGTGAA TCAAGAGTTA CTGAATTGTA TCAGTGGTGA TATCCAAATG ACAGATTTTT GGACATTTAA TCCTGATCTT GTTGAGTGGA ATTCCGTGGC AAGAGTATCA ACGTTTTTTC CTATGACAAA AGCGATTAAT ACCATCACAG TGCAAGCGAA CGAAGGTGAA GAATTAATTG ATGGTAACTT AATGATTGTT GGTTATGTTA ATCGCGAGGT TTATCATAAT CACGTCATTA AAGGGAAGAG AGAGAGTTTC ATGAGATATT GTGAGCAATT TCCAAATTGT GCTTTTACAA AGGAATTGCG AGACCAATAT CTCCCAAGCA TTTTGAGCAA GCCAGCTTTT AGGAAAGGAT TGTTGAAGTA CAATGAGCCA GTTCGAGTTG GGTCAGTGAA TTTCTCGTGC TTGATACGAG CTTATTTAAA AGTGGAAGAA ATGTTTGAGG ATCTAGGATT TCTTAAAGAA GCTGGACCAC AGTGGGATCC TATTGAGATT TTGGAGGATT TAAATAAGAA AGCCGCGATG GGTGCACTGT ATCAAGGGAA AAAACAAGAC TGGTTCAAGT CCATGGAGCC TGCAGATTTC ATCATGGCAG TGCGTGAAAG TTTCAAACAC TTGGCTGGTG GGGATGTTGG TATTTGGAGT GGCTCACTCA AAGCAGAATT GAGACCTGTT GAGAAAGTAC TTGAGCAGAA AACGAGAGTG TTTACTGGAG CTCCAATTGA TTTGCTGTTA GGGGGAAAGA TTTTAGTTGA TAATTTTAAT CATTTCTTTT ATTTTAATCA TTTGAAGGGA CCTTGGACTG TAGGAATCAA TAAATTTAAT AAAGGTTGGG ATAGATTAGC TAGGTATTTT AACCATAGTT GGAACTTCAT AGATTGTGAT GGTAGTAGGT TTGATACTTC TTTAGCTCCC ATTTTGTTTC AATTAGTGTG TCACATGCGA GAAAAATTTG GAAATTTTGA TGATATTGAG AGGGCAGCTC TTCGCAATTT ATACACACAG ATAGTGTATA CGCCAATTTT AACAATTGAC GGATACATTA CTAAGAAGCA CCGTGGAAAT AATAGTGGAC AACCTTCTAC AGTTGTTGAT AACACTATTA TACTAATGAT TGTTGTGGAA TATTGCAAGG CTGTCATGGA GAGTGAAGGA AGAGTGATGC AATTCAAGTA CATGTGTAAC GGGGATGATC TGATTCTCAA TGTTCCTGAT GACGAAGTGA GCATAATTCA GAGTAGGTTC AGAGAGTTGT TTTCAGAATG TGGTTTAGAT TATACTTTTG ATGATGTTCA CAAGTCAATA GAAACAATTG AGTATATGAG CCATTCATTC ATGCTGAAAG ATGATGTGTA TATTCCAAAG TTGAAGAAAG AAAGAATTGT TGCAATTCTT GAATGGGAGA GAGGTGATGA GATTATGCGA ACGCGGAGTG CTCTTAATGC TGCTTATATT GAAAGTTATG GATATGATGA CCCTATGGTT GAAATTGAGC GGTATGCGGT TTTCTGGGCT ACCGAGAAAG GTTGTGAGTA TCCATTACTG GATAGAAAGC GTGTAGAAGG ACTTTACAAA GATGATTACA CAGATATCAA CGAAGAATGG CTGGTAGGTA TTTTACCACC ATCATTCGAA CATTGTTATG TTGACACACA GACTGAAGAT CTGAGAGGAA GAGAGAAGCT TGAGTTGAGA ACTGAGAGCC ATGATAGAAT ATCCCAACTG CAAATGAAAT TTCCAGTTAC ATTTGTGACA GGAAATTTGG GAAAATTAGC AGAAGTGAAG TCTATTCTTG GCATTTCAAG TGATGTTATG GCTAGGAACA TTGATTTACC AGAAGTGCAA GGGACTCCGG ATGAAATTGT GATAAAGAAA GCGCAATTAG CAGTGAAGAT GACTAATAGT CCTGTTTTAG TCGAAGATAC ATGTCTCTGC TTTAATGCTT TCAATGGACT TCCTGGGCCA TACATAAAAT GGTTTTTAAA AGAATTGGGT CTTGAAGGTG TTGTTAAAAT GCTGTCAGCA TTTGGAGATA AATCAGCGTA CGCACTATGC ACATTCGCAT ATGTGCACAA TGAATTGTCT GATCCGGTTG TGTTTAAAGG AGTTGTAAAT GGTGAAATTG TGCCGCCACG AGGTAACAAT GGTTTTGGTT GGGATCCTAT ATTTAAACCT GACGAATGTA GTTGTACGTT CGCAGAAATG CCAAGCAGCA TTAAGAATGA TTTTTCCCAC AGAAGAAGAG CTTTAGAGAA AGTCAAATTG TTTCTTGATA ACTTAGTGGT GAAGCAAGAG AAGAAGAAGG CAGGAGTGGC TCTAACGATT GATGTTCAGG CCTTAAATCA GGAGGAGATT GAAGCGGAGA TCACTGCTCT AAAGAAGATA TGGAAGGATA ATGGACCAAC AAGAACACGT AGTCCATTTG AGGCTAGGAG ATTGAGAGCC CCACAAGTTG AGCGTGTAAA TGAGTTACTT CAGAAACTGA AGGATGAAGG ATTGCAAACA AAGAAGAGGC CATGTGGAGA GCCAGATGAT GGAGAAGTGG TCGATGATGA TAGTGATGAT GGTAATGATC AGAGATCTGG AAAGGAAGTT GTTGATGAAA GCCAGAATAA TCAGCAAGTT GATCCAAGAA AGCCGAAATT CAAAATTAGA GGAGATGGAA ATACCATTAG ACGGGATGAC ATTGATAAAA TCCCAACTAA TGCTCTTGAG ATTAAGAAGA CTTTCAAGCC TCCAAAGGTG TCACAGTCAG CTTACATTTG GATTCCACGC TCTCAAAGGG ATAATCTAAC TCCTGATGTA ATTCAGAATT TCCTGGCATA CATACCTCCA TCTCATGCTA TAGATAATCA ACTTGCTTCA GGAATTGAAG TTGAGAATTG GGCAATTGAG GTTGCTAAAG CATATGGAGT TAATATACAG GAATTTTATC GCACAATTTT ACCAGCTTGG ATAGTGAACT GTATAGTGAA TGGTACTAGC GATGAAAGGA AAAATGAGAA GTCGTGGCGA GCAGTCGAGT TGAATTCTCA GGGGGAAGAT GTTGATGATT TTGAGTATCC AATGGAACCA ATGTACAAAT TTGCATTGCC GACTATGAGG AAGGTTATGA GAAACTTCTC TAGCCAAGCT ATCCTCATGT ATCAGAATAG TGTTGCTGCA GGTAAGGCGT TTGTGATAAA AGCTGCTAGA AATGCTGGGT ACACAAGTAT TGAAAATAAA TGGCTAGGTA TAGATTTTCT TGCCGAAGCC CAATTGTCCC AGAGTCAACT TGATATCAAG CACCAGATTC TGGCAGCGAA TGTTGGTAGA ACAAAGACAA GACTGTTTGC ATTAGCAGCT CCTGGGGACG ATAACAATGT AGATAGAGAA AGGCACACGA CACACGATGT CAGTGCAAAC AGGCACAGTT ACAGTGGTGC CGCAATTGAA TAAATAAAAT ATTAGTGTTT CTAATTGAGT TTGAATGAGA TCATAGCTTG GTTGGAAAGC TAAGTTGTGT TTCAAATTTG AATTCAAGTA CTTAAATATT GTATTTTATT TCCAAGTTTG GTGGAGTTTT GGATTGCCAA TTATATTTTG GTTAGATAAG CCAAAATGTA TTTTGGAGAT CTTTCTCCAT ATCCTTTTGT TTGGTGTAGA AATATACCTT ATAAAAGTCC 
Length9070
Protein Sequence
Protein Residue
A.thaliana
AGI-code
Description
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
1.73205 Virus3260
2 Ahg887495 phloem protein 2-A6
2.44949 Virus1902
3 Virus3144
7.34847 Ahg937166 Defensin-like (DEFL) family protein
8.3666 Virus2667
8.94427 Virus0121
9.79796 Virus2153
10.247 Ahg947981 transcriptional factor B3 family protein
10.3923 Virus0363
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression