| Annotation |
|---|
| Description | jgi|Araly1|314752|fgenesh1_pm.C_scaffold_1003532 |
| Sequence |
ATGGAGAATC AGGAATCGGA CGAGCCGATG CAGAAGAAGC CTCATCTTTT AGACTCCGTC TCTCCGACTT CCATGGCCCG TAATTCTTCA CCTTCTCACC CTATTGCTAA AAGTGTTGAT GCCACTGTTC TACAGTTACA GAATCAGAAA CTGGTTCAGC AGTTAGACCT TCAGAAGAAA CACCTGTACG ATGTTGAAAC CAAGATCCAA GAGTTGCAAA TCAAACAAAC GTCTTATGAT GATGAACTTA TCTCAGTTAA CCAGCTTTGG AATCAGTTGG TAGATGATCT GATATTGCTT GGAGTTCGTG CTGGGGCTAA TCAAGAGGCT CTAAAATACT TGGACATTGT AGATAAACAG CGAGTTCCAC CATGCGCTGC TGATGAAATG TTTCTGTGTA GACTTCTGCA AGTTGATTCC TTAGATACTA GTAATAGTGA TGAGGTAGTA GGAAAGGTTG AAGAAGCTCT TGCTTTGCGT CATTCCTCTA CAATGGAATT GATGGGACTC TTTGAGAACA CCATTGCTAC ACAGAGGGCG AAAGCTGAAA GTATTTCTCA AAATTTACAT GCTGTGAAAT CGGCAGAAGA TGCCACCATC CAGTTATCTA GCATTAATGA TTTGATGAAA GAGGAGGCCA AAAACTTGCG TGAGATGATT GATACTTTAC ATGTGAGGCA CAAAGAACAC ACCGAGCAGA TTCATGCATA CATAAGCAGC CATTCGACAG ATCAATCCGA GCTTAAACAC CTCAAAGGTC AATTGGAAGA GATCAAGGCT GAGCTTGAAG AAAATAGAAG AAAATTGATA ACTCTGAAAA TGCAGAAGGA TGCTGCATGT GAAGGTCATG TAACATCACC AGCAATAGCA AATGGAAGCC TTTCTCCTGA GAAGCCTATA GATAAAACGA AGTTGCGTGA ATTGAAGGAC TCCATTGATG AAATAAAGAT AATGGCAGAA GGTCGTCTGT CTGAGCTTCA AGCTGCACAA GAGTATAATC TTTCCTTGTC AAGACAATGT CAAGATATTG AGAATGAACT AACGGATGAC CAGCATATAT ACTCGTCTAG ACTGTATAGT TTGATCAATG ATCGAATTCA TCACTGGAAT GCTGAACTGG ACCGGTACAA AATTCTGACT GAGGCCATTC AGGCTGAAAG GTCCTTTGTA ATGAGACGGG AGAAGGAACT AAATCTAAGG GCAGAATCCC TAGAGGCAGC CAACCATAAG ACTACCACTG TTGGTTCTAG AATTGAAGTT CTGGAAAAGA AGCTGCAGAG TTGTATAGTT GAAAAGAATG GATTAGAGCT TGAAACGGAA GAAGCTATTC AAGATTCTGA ACGGCAAGAT ATTAAAAGTG AGTTTATTGC AATGGCATCA ACCTTATCTA AAGAGATGGA AATGATGGAA GCACAGTTGA AACGGTGGAA GGACACTGCA CATGATGCTC TTTACCTGCG TGAACAAGCT CAATCGCTGA GAGTTTCGTT AAGTAACAAG GCAGACGAAC AGAAGGGTTT AGAGGATAAA TGTGCTAAAC AGATGGCGGA AATTAAATCT CTCAAGGCTC TAATTGAGAA ACTTCTGAAA GAAAAATTAG AGCTGCAAAA TCTAGCAAGC ATCTGTACGC GTGAGTGTAA TGATGAAAGA GGACTGGCAG AAATCAAGGA ATCACAACGG AAAGCCCAAG CTCAGGCTGA AGAGCTGAAA AACGTTTTGG ATGAACACTT TCTTGAATTG AGAGTGAAAG CGGCTCATGA GACTGAAACT GCTTGCCAAG AAAGGCTTGC AACCGCGAAG GCTGAAATTG CTGAATTGAG GACTCAGTTA GATCTTTCTG AGAGGGAGGT TTTGGAACTT AAGGAGGGTA TTAAAGTTAA AGAGCAGGAG GCAGAGGCAT CCATTGCTGA AATGGAGACT ATTGGTCAAG CCTATGAAGA CATGCAGACA CAGAACCAAC ATTTGTTGCA GCAGGTGGCT GAGCGGGACG ATTCTAATAT CAAGCTTGTT TCCGAGAGTG TCAAGACAAA GCATGCTTAC AACACTCACT TATCTGAGAA GCAAGTTATG GAAAAGCAGC TACAACAGGT TAATGCATCC GTAGAGAATT TTAAAGCAAG GATTGCACAT AGTGAGGAAC AGATGAGAGG CTGTTTTTCT GAGGCTTATA AATTGATTCA AGAAGATCGT CACCTCGCTA TCAGCCTCGA AACCACCAAG TGGGAAGTAG CTGATGCTGA CAAGGAATTC AGATGGCTCA AGTCTGCTGT TTCTTCATCC GAAAAGGAAT ATGAACAGAT CAGTAGGAGG ACAAACGACA TCAAACTGGA ATTGGATGAT GAAAGGAGGG AGAAGAAGAA GCTTGAGGAA GAGCTGATGG AGTTGAACAA GGAGCTTGGA GAGTTGGGTT CTGAGAGTGT AGAAGCTGCC ATAGTGAGAC TCCAGGAAGA AGTTAAGAAT TGCAAAAACA TCCTCAAATG TGGCGTTTGT TTTGATCGGC CTAAAGAGGT GGTAATTGTG AAATGTTATC ATCTCTTCTG CCAGCAATGC ATCCAACGTA GCTTAGAGAT CCGACACCGG AAATGTCCAG GCTGCGGTAC CGCCTTTGGT CAGAACGACG TCCGACTTGT CAAAATGTAA |
| Length | 2640 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 27748494.. 27753480 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G55250.1 |
| Description | histone mono-ubiquitination 2 |
| TAIR curator summary | Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. |
| Alias | [HUB2][histone mono-ubiquitination 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg472410 | SWITCH/sucrose nonfermenting 3C |
| 4.24264 |
Ahg476853 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| 6.78233 |
Ahg495780 | CwfJ-like family protein / zinc finger (CCCH-type) family protein |
| 7.2111 |
Ahg352054 | Uncharacterised conserved protein UCP009193 |
| 9.74679 |
Ahg903661 | arogenate dehydratase 2 |
| 11.225 |
Ahg479648 | dentin sialophosphoprotein-related |
| 13.784 |
Ahg890214 | nucleotide binding;nucleic acid binding;RNA binding |
| 14.9666 |
Ahg495043 | ATP-dependent Clp protease |
| 18.7617 |
Ahg474290 | Amino acid dehydrogenase family protein |
| 19.2094 |
Ahg477928 | SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|