Detail


ID : Ahg315436

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|315436|fgenesh1_pm.C_scaffold_2000469
Sequence
ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGTG TATGCATGCG ATGCAAATCC AAACCTCCGC CTGAAGAATC TCTCACTTGC GGCACGTGCG TTACGCCGTG GCACGTGTCC TGTCTCTCAA CCCCACCCGA AACCCTAGCT TCTACTTTAC AGTGGCATTG TCCTGATTGC TCCGGCGAAA TCGATCCTCT TCCTGTTTCC GGCGACGTTT CTGGTTATGG ATCTGTTGGT TCAGATCTTG TTGCAGCGAT TCGCGCGATT GAGGCTGATG AGTCGCTGAG TACTGAAGAG AAAGCTAAGA AGAGGCAACG GTTGTTAAGT GGTAAAGGCG TCGTTGAGGA TGACGAAGAA GAGAAGAAGA GTAAAGGGAA GAATTCGAAT CTCGATGTTT TATCAGCTCT TGGAGATAAC TTGATGTGTT CTTTCTGTAT GCAATTGCCT GAGAGACCTG TGACGAAACC ATGTGGGCAC AACGCTTGCT TGAAATGTTT TGAGAAGTGG ATGGGGCAGG GCAAGCGAAC TTGTGGTAAA TGCCGAAGCG TAATTCCGGA GAAAATGGCT AAGAATCCCC GTATCAACTC GTCCCTTGTG TCTGCTATTA GATTAGCGAA AGTATCTAAA AGTGCTGCTG CGGGTACTTC AAAGGTCTTT CATTTCATAA GCAATCAAGA CCGACCAGAT AAAGCATTTA CAACTGAGCG TGCAAAGAAA ACTGGGAAGG CGAACGCTGC TAGTGGAAGG ATTTATGTTA CAATACCACC AGATCACTTT GGTCCTATAC CAGCTGAAAA CGATCCTGTC AGGAACCAAG GTCTTTTGGT TGGAGAATCC TGGGAAGACA GACTCGAGTG TAGGCAGTGG GGGGCTCACT TCCCACATGT TGCTGGCATT GCTGGACAAT CAAATTATGG AGCTCAATCT GTAGCACTCT CTGGAGGTTA TGAGGATGAT GAGGATCATG GAGAATGGTT TCTATACACA GGAAGTGGGG GAAGAGATCT CAGTGGCAAC AAAAGGACTA ATAAGGAGCA GTCCTTTGAT CAAAAATTTG AAAAGTCTAA TGAAGCCTTA AGACTTAGCT GCAAACTGGG GTATCCTGTT CGAGTTGTCA GGTCTCACAA GGAGAAGCGT TCTGCATATG CCCCTGAGGA GGGAGTGAGA TATGATGGGG TGTACCGGAT CGAGAAGTGC TGGCGGAAAG TTGGTATACA GGGTTCTTTC AAGGTCTGTC GTTACCTGTT TGTTAGATGT GATAATGAGC CAGCTCCATG GACTAGTGAT GAGCATGGAG ATCGCCCAAG ACCTTTGCCT AATATTCCAG AGCTGAATAT GGCCACAGAC CTGTTTGAGA GAAAAGAAAG TCCATCATGG GATTTTGATG AAGGTGAGGG TTCTTGGAGA TGGATGAAGC CGCCACCTGC TAGTAAAAAG TCAGTGAATG TTTTGGATCC TGAGGAGAGG AAAACTTTGA GGAAAGCCAT AAAGGCAGCA CACTCGAATA CCATGAGGGC AAAACTTCTG AAAGAATTTA AGTGCCAGAT CTGTCGGCAA GTGCTGACTC TTCCAGTGAC AACGCCGTGT GCTCATAACT TCTGCAAGGC ATGCTTAGAA GCCAAATTTG CTGGGAAAAC GCTAGTGAGG GAGAGAAGCA GAGGTGGACG AACTCTACGA GCACAGAAGA ATGTGATGAA CTGCCCTTCT TGCCCCACTG ACATTTCCGA TTTTCTCCAG AACCCTCAGG TCAATAGAGA AGTCATGGAG GTCATAGAGA GGTTGAAGAA TCAGGAAGTG GACAATGCCG AGATTGTAGA TGAAGGCGAA GGCGAAGGCT CAGGTACCAA CGCTGAAGAA GAAACTCTGG CCGAGTCTGA AGATGCTGAG CAACCGAAGA AACGGATTAA GTTGGACACC GACACAGCAG TTTCTGCGAC TGCTGTGTAA
Length1950
Protein Sequence
Protein Residue
Map Locationscaffold_2: 4552868.. 4556525
Download Sequence
A.thaliana
AGI-codeAT1G57820.1
DescriptionZinc finger (C3HC4-type RING finger) family protein
TAIR curator summaryEncodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.
Alias[ORTH2][VIM1][ORTHRUS 2][VARIANT IN METHYLATION 1]
Gene coexpression
MR
MR Locus Description
10.0499 Ahg489762 ORTHRUS-like
17.3781 Ahg487523 Eukaryotic aspartyl protease family protein
19 Ahg323079 ATP binding microtubule motor family protein
19.1311 Ahg481533
20.6155 Ahg489144 histone B2
24 Ahg480759 RNA-binding (RRM/RBD/RNP motifs) family protein
25.3772 Ahg329505 Leucine-rich receptor-like protein kinase family protein
25.923 Ahg471136 SKP1-like 18
26.9444 Ahg478145 Protein of unknown function, DUF642
27.2764 Ahg927503 Leucine-rich repeat (LRR) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression