| Annotation |
|---|
| Description | jgi|Araly1|323999|fgenesh1_pm.C_scaffold_5001543 |
| Sequence |
ATGCCTGCGA TACAAACCCC ATCGGGGAAG ATCTTGCAGC TTGAGATGGA GAATTTCAAA TCTTACAAGG GTCATCAATT GGTTGGTCCT TTCAAGGATT TCACTGCTAT TATTGGTCCC AACGGTGCTG GCAAATCTAA CCTAATGGAC GCTATTAGCT TTGTGCTCGG TGTTCGTACC GGTCAACTTC GTGGTTCTCA GCTTAAGGAT CTTATCTACG CTTTTGATGA TCGTGACAAG GAACAGAGAG GTCGGAGAGC GTTTGTTCGA CTCGTTTATC AGATGGACGA TGGAGTAGAG CTTCATTTCA CACGTACTAT TACTAGCGCT GGTGGGAGTG AGTACCGTAT CGATAATAGG GTTGTGAATT TGGATGAGTA CAATGGGAAG CTACGATCTC TAGGGATACT TGTTAAGGCT CGTAATTTCT TGGTGTTTCA GGGTGATGTT GAATCTATTG CTTCGAAGAA TCCAAAAGAA CTTACTGGAC TCCTCGAAGA GATTTCTGGG TCCGAGGAGC TTAAGAAAGA GTATGAAGAA CTAGAAGAAA AGAAGGCCAG TGCTGAAGAA AAAGCAGCTC TTATATACCA GAAGAAGAAA ACCATTGGGA ATGAGAAGAA GCTGAAGAAA GCACAGAAGG AAGAAGCTGA GAAGCATCTA AGGCTGCAGG AAGAACTGAA AGCTCTGAAG AGAGAACGCT TCCTATGGCA ATTGTATAAC ATTGAAAATG ATATCGAGAA GGCGACTGAG GATGTTGATG CTGAAAAGAG CAATCGTAAA GATGTCATGA GAGAGCTGGA AAAGTTTGAA CGTGAGGCAG GTAAGAGAAA GGTAGAACAA GCAAAGTATC TGAAAGAAAT TGCTCAACGT GAGAAGAAGA TTGCTGAGAA AAGCTCGAAG CTTGGAAAAA TTGTGAGTAT ACCTTGGAAA TCTGTGCAAC CTGAGCTTCT GAGATTTAAG GAGGAGATAG CTCGCATAAA AGCAAAAATT GAGAGCAACA GAAAGGACGT GGATAAGAGG AAAAAAGAAA AAGGGAAGCA TTCCAAAGAA ATTGAACAGA TGCAGGATAG CATTAAGGAG CTGAATAAGA AAATGGAATT ATATAATGAG AAGAGACAAG ATAGCAGCGG AAAACTCCCA ATGCTTGACA GTCAACTGCA AGATTATTTT CGACTAAAAG AAGAAGCTGG AATGAAAACC ATTAAGCTAA GAGATGAGCA CGAGGTTCTA GAGAGGCAAC GGCGTACTGA TCTCGAAGCA TTGAGAAATC TGGAAGAAAA TTACCAGCAA CTAATAAACA GGAAGAATGA TCTTGATGAA CAAATTAAGC GATTTAAAGA CAGGCAAGAA GAGATTGAAA CATCTTCTTC GAAATATAAG AATGAAACAA CTAGTCTGAA AAAGGAGTTA CGTGCACTGC AAGAGAAGCA TGTAAATGCC AGGAATGCCT CTGAGAAGTT GAAGACTAGA ATCGCGGAAT TAGAAGACCA GTTAAGTGAT TTAACGGCTG AAAGGTATGA AAATGAGAGA GATAGTAGGC TAACACAGGC TGTTGAGTCT CTCAAGCGTC TATTTCAAGG AGTTCATGGT CGGATGACTG ATCTTTGTCG GCCAAATCGG AAGAAGTATA ACCTTGCTGT CACTGTTGCC ATGGGAAGAT TTATGGATGC AGTAGTTGTA GAAGATGAAA ACACGGGAAA GGATTGCATC AAGTACTTGA AAGAGCAAAG GCTTCCTCCT ATGACATTTA TTCCTCTTCA GTCAGTACGT GTCAAGCAAG TGTTTGAAAG ATTGAGAAAT TTGGGTGGCA CAGCAAAGCT GGTGTTCGAT GTTTCTAAAG TATATGTTTT GGTCCTTAAC TACTCCACGT TCGATCCTGA ATTGGAGAAG GCGGTCCTCT TTGCTGTTGG AAATACTCTT GTCTGCGACG AACTTGAAGA AGCCAAGGTT CTTAGCTGGA CCGGAGAGAG ACATAAAGTT GTGACTGTTG ATGGTATATT ACTCACAAAG GCGGGAACAA TGACTGGTGG TACCAGTGGT GGAATGGAAG CAAAGTCTAA TAAATGGGAT GATAAGAAAA TTGAAGGTTT GAAGAAAAAG AAAGAAGAAC ATGAACTAGA ATTGGAAAAT ATTGGATCTA TTCGAGAAAT GCAAATGAAG GAGTCTGAAA TATCGGGTAA AATAAGTGGA CTTGAAAAAA AGATTCAGTA TGCTGAAATT GAGAAGAAAA GCATCAAAGA CAAACTTCCA CAGCTTGAGC AAGAGAAGCG GAATATCATT GAAGAAATTG ATCGCATAAA GCCTGAACTC TCTAAGGCAA TTGCAAAAAC TGAGGTCGAT AAGAGAAAGA CAGAAATGAA TAAGTTGGAG AAAAGAATGA ATGAGATTGT GGACCGTATC TATAAGGATT TTAGCCAGTC TGTTGGGGTT CCAAACATAC GTGTATATGA AGAAACTCAG CTGAAGACTG CTGAAAAGGA GGCTGAAGAA AGGCTGGAAC TGAGTAATCA GCTTGCTAAG TTAAAATACC AGCTGGAATA TGAGCAAAAC CGAGATGTGG GGTCACGGAT TCGAAAGCTA GAGTCTTCTA TCAGTTCTCT GGAAACTGAT TTGGAAGGTA TACAGAAGAC AATGTCTGAA CGTAAGGAGA CAGCAGTAAA AATTACTAAT GAAATCAACA ATTGGAAGAA GGAAATGGAA GCAAAAATCT GCACTGGTAT CTTCTTTCTT AAAGACTATT TAATGCTCCT GCTTGCAGAG TGCAAACAAA AGTCGGAGGA GTATGAGAAG GAAATCCTGG ATTGGAAAAA GCAGGCTTCT CAAGCGACAA CTAGCATAAC CAAGCTCAAT CGTCAAATAC ATTCGAAGGA AACACAAATT GAGCAGCTGA TCTCGCAGAA GCAGGAAATA ACTGAGAAGT GTGAGCTCGA ACATATTACC CTTCCTGTTT TATCAGATGC TATGGAGGAA GATGACTCAG ATGGGCCACA GTTTGACTTT AGTGAGCTAG ATAGAGCTTA TCTCCAAGAA CGGAGACCAT CTGCTCGTGA AAAAGTGGAG GCGGAATTTA GGCAGAAAAT AGAATCTAAA ACATCCGAGA TTGAAAGAAC GGCTCCAAAT TTGAGAGCGC TTGACCAGTA TGAGGCTATA CAAGAGAAGG AAAAACAAGT TAGCCAGGAG TTTGAAGCGG CCAGGAAAGA GGAGAAGCAA GTAGCGGATG CCTTTAATAC TGTTAAGCAG AAGAGGTATG AGCTATTTAT GGAAGCTTTC AACCACATTG CTAGCAACAT TGACAAGATC TATAAGCAAC TAACCAAGAG TAATACGCAC CCACTGGGTG GGACTGCCTA TCTAAACCTA GAAAATGAGG ATGATCCGTT TCTACATGGT ATAAAGTATA CTACAATGCC CCCAACAAAG CGATTTCGTG ACATGGAACA GCTCTCTGGA GGAGAGAAAA CAGTTGCGGC CTTGGCGTTG CTCTTCTCCA TCCATAGCTA TAGGCCTTCA CCCTTTTTCA TACTTGATGA AGTGGATGCT GCGCTTGATA ATTTAAACGT GGCAAAAGTT GCTAAATTCA TACGTAGCAA GTCATGCCAA GCGGCACGTG ACAATCAGGA TGCAGAGGAT GGGAATGGCT TCCAAAGCAT TGTAATATCT CTCAAGGACA GCTTCTATGA CAAGGCAGAA GCTCTGGTTG GAGTTTACAG AGACACTGAG AGGAGTTGCT CAAGTACAAT GTCATTTGAC CTTCGGAACT ACCAAGAATC GTGA |
| Length | 3774 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 16161772.. 16169766 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G54670.3 |
| Description | Structural maintenance of chromosomes (SMC) family protein |
| TAIR curator summary | Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment. |
| Alias | [ATSMC1][SMC1][TTN8][STRUCTURAL MAINTENANCE OF CHROMOSOMES 1][TITAN8] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg331729 | |
| 2.44949 |
Ahg475241 | U2 snRNP auxilliary factor, large subunit, splicing factor |
| 2.82843 |
Ahg492144 | DEK domain-containing chromatin associated protein |
| 2.82843 |
Ahg471712 | protein-protein interaction regulator family protein |
| 3.4641 |
Ahg494609 | Transducin family protein / WD-40 repeat family protein |
| 4 |
Ahg471053 | phytochrome A |
| 4.47214 |
Ahg925037 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| 4.79583 |
Ahg470287 | kinase interacting (KIP1-like) family protein |
| 5.2915 |
Ahg489743 | |
| 5.56776 |
Ahg480564 | GCIP-interacting family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|