| Annotation |
|---|
| Description | jgi|Araly1|471053|fgenesh2_kg.1__1007__AT1G09570.1 |
| Sequence |
TGGGCATGCG TATTCGGGGT GGTCCCATTC ATCGTCGTCG TCGTCTGTGT TAGGGAGCAC AAATAATAGA GAGGCGTAGC AGAAGAGAGA AGGCGGTGAT CGAGGTCAAG ATTTAGAAAA CCTCTGAAGA GTGTGACTAG ACACGAGATC TGATCATGGC TTCTTGAAAC TTCTTCTTCT TCTTTCTTCT TCTCTTTAAA GGAAAAAAAT GTCAGGGTCT AGGCCGACTC AGTCCTCTGA GGGCTCGAGG CGATCAAGGC ACAGCGCTAG GATCATTGCG CAGACCACTG TAGATGCGAA GCTCCATGCT GATTTTGAGG AGTCAGGCAG CTCCTTTGAT TACTCAACCT CAGTGCATGT CACTGGCCCG GGCGTGGAGA ACCAGCCACC GAGGTCTGAC AAGGTTACCA CGACTTATCT TCATCACATA CAGAAGGGAA AGCTGATTCA GCCCTTCGGT TGTTTGCTTG CCTTGGATGA GAAGACCTTC AAAGTCATTG CATACAGCGA GAATGCATCT GAGCTGTTGA CAATGGCCAG TCATGCAGTT CCTAGTGTTG GTGAACACCC TGTTCTAGGC ATTGGGACAG ATATAAGGAG TCTTTTCACT GCTCCTAGTG CCTCTGCATT GCAGAAAGCC CTTGGATTTG GAGATGTCTC TCTTTTGAAT CCCATTCTTG TGCACTGCAA GACTTCTGCC AAGCCCTTTT ATGCGATTAT CCACCGGGTT ACAGGGAGCA TCATCGTCGA CTTTGAACCG GTGAAGCCTT ATGAAGTCCC CATGACAGCT GCTGGTGCCT TACAATCATA CAAGCTCGCT GCCAAAGCAA TCACTAGGTT GCAATCTTTA CCCAGCGGGA GCATGGAAAG GCTTTGCGAT ACAATGGTTC AAGAGGTTTT TGAACTCACG GGGTATGACA GGGTGATGGC TTATAAGTTT CATGAAGATG ATCACGGTGA GGTTGTCTCC GAGGTTACAA AACCTGGGCT GGAGCCTTAT CTTGGGCTGC ATTATCCAGC CACCGACATC CCTCAAGCAG CCCGTTTTCT GTTTATGAAG AACAAGGTCC GGATGATAGT TGATTGCAAT GCAAAACATG CTAGGGTGCT TCAAGATGAA AAGCTTTCCT TTGACCTTAC CTTGTGTGGC TCCACCCTTA GAGCACCGCA CAGCTGCCAT TTGCAGTACA TGGCCAACAT GGATTCAATT GCATCTCTGG TTATGGCGGT TGTAGTTAAC GAGGAAGATG GAGAAGGGGA TGCTCCTGAT TCTACTACAC AGCCTCAAAA GAGAAAGAGA CTATGGGGTT TAGTGGTTTG TCACAACACA ACTCCGAGGT TTGTTCCATT TCCTCTCAGG TATGCCTGTG AGTTTCTAGC TCAAGTGTTT GCCATACACG TCAATAAGGA GGTGGAACTG GAGAACCAGA TGGTGGAGAA GAACATTTTG CGTACGCAGA CACTCTTGTG TGATATGCTG ATGCGTGATG CTCCACTTGG TATTGTGTCG CAAAGCCCCA ACATAATGGA CCTTGTGAAA TGTGATGGAG CAGCTCTCTT GTATAAAGAC AAGATATGGA AACTGGGAAC AACTCCAAGT GAGTTCCATC TGCAGGAGAT AGCTTCATGG TTGTGTGAAT ACCACTTGGA TTCAACGGGT TTGAGCACTG ATAGTTTGCA TGACGCTGGG TTTCCTAAGG CTCTATCTCT CGGGGATTCG GTATGTGGAA TGGCGGCTGT GAGGATATCA TCCAAAGACA TGATTTTCTG GTTCCGTTCT CATACTGCTG GTGAAGTGAG ATGGGGAGGT GCAAAGCATG ATCCAGATGA TAGGGATGAT GCAAGGAGAA TGCACCCGAG GTCATCGTTC AAGGCTTTCC TTGAAGTGGT CAAGACAAGG AGTTTACCTT GGAAGGACTA TGAGATGGAT GCCATTCACT CCTTGCAACT TATTCTGAGG AATGCTTTCA AGGATGGTGA AACTACTGAT GTGAATACAA ATGTCATTCA CTCAAAGCTA AATGATCTAA AAATTGATGG TATACAAGAA TTAGAAGCTG TGACCAGTGA GATGGTTCGT TTGATTGAGA CTGCTACGGT GCCAATATTG GCGGTTGATT CTGATGGATT GGTTAATGGT TGGAACACGA AAATTGCTGA GCTGACTGGT CTTACGGTTG ATGAAGCAAT CGGGAAGCAT CTCCTCACAC TTGTTGAAGA TTCTTCAGTA GAAATCGTCA AAAGGATGCT AGAGAATGCA TTAGAAGGAA CTGAAGAGCA GAATGTCCAA TTTGAGATCA AGACACATCT GTCCAGGGCT GATGCTGGGC CAATAAGTTT AGTTGTAAAT GCATGCGCAA GTAGAGATCT CCATGAAAAC GTGGTTGGGG TGTGTTTTGT AGCCCATGAT CTTACTGGCC AGAAGACTGT GATGGACAAG TTTACTCGGA TTGAAGGTGA TTACAAGGCA ATCATCCAAA ATCCAAACCC GCTGATCCCG CCAATATTTG GCACCGATGA GTTTGGATGG TGCACAGAGT GGAATCCAGC GATGTCAAAG TTAACCGGTT TGAAGCGAGA GGAAGTGATC GACAAAATGC TCTTAGGAGA AGTCTTCGGG ACACAGAAGT CATGTTGTCG TCTAAAGAAC CAAGAAGCCT TTGTAAACCT TGGAATTGTA CTGAACAATG CTGTGACCAG TCAAGATCCA GAGAAAGTGT CGTTTGCTTT CTTTACAAGA GGTGGCAAGT ATGTGGAGTG TCTGTTGTGT GTGAGTAAGA AACTGGACAG GGAAGGTGTA GTGACAGGTG TCTTCTGTTT CCTGCAACTT GCCAGCCATG AGCTGCAGCA AGCGCTCCAT GTTCAGCGTC TAGCTGAGCG AACCGCAGTG AAGAGACTAA AGGCTCTAGC ATACATAAAA AGGCAGATCA GGAATCCGCT ATCTGGTATC ATGTTTACAA GGAAAATGAT AGAGGGTACT GAATTAGGAC CAGAGCAGAG ACAGATTTTG CAAACTAGCG CGTTATGTCA GAAGCAACTA AGCAAGATCC TTGATGATTC GGATCTTGAA AGCATCATTG AAGGGTGCTT GGATCTGGAA ATGAAAGAAT TTAGCTTAAA CGAAGTGTTG ACTGCTTCCA CAAGCCAAGT AATGATGAAG AGTAACGGGA AGAGTGTTCG GATAACAAAT GAGACCGGAG AAGAAGTAAT GTCTGACACT TTGTATGGAG ACAGTATTAG GCTTCAACAA GTCTTGGCAG ATTTCATGCT GATGTCTGTA AACTTTACAC CATCCGGAGG TCAGCTAACT GTTACAGCTT CCCTGAGCAA GGATCAGCTC GGGCGTTCTG TGCATCTTGC TAATCTAGAG ATCAGGTTAA CGCATACAGG AGCTGGGATA CCTGAGTTTT TACTAAACCA AATGTTTGGG ACTGAGGAAG ATGTGTCAGA AGAAGGATTG AGCTTGATGG TTAGCCGGAA ACTAGTGAAG CTGATGAATG GAGATGTTCA GTACTTGAGA CAAGCTGGGA AATCGAGTTT CATTATCACT GCGGTACTCG CTGCAGCAAA CAAGTAGTCC TCGAAAGAAA AGGGGTCATG GCTTGATATA AAATAGTCAC TGGTTGTTCT TTGTTTGTAA CGTTGCTTGG CGCTTTTGCT TTCGTTTTCA AATTTCAATA ACGATGAAAT ATCCATCCAT TTACATCTTC TCTTAAACTC TTTTCTGAAG CTGTAAATAT GGATGCATAT TTAATCTCCC CTTGAGTGTT TTGGTTTCAT GATGTATCAT TCAAA |
| Length | 3795 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 3470842.. 3475797 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G09570.1 |
| Description | phytochrome A |
| TAIR curator summary | Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. |
| Alias | [FHY2][FRE1][HY8][PHYA][FAR RED ELONGATED HYPOCOTYL 2][FAR RED ELONGATED 1][ELONGATED HYPOCOTYL 8][phytochrome A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4 |
Ahg323999 | Structural maintenance of chromosomes (SMC) family protein |
| 6 |
Ahg496503 | MA3 domain-containing protein |
| 6.78233 |
Ahg912305 | disease resistance protein (TIR-NBS-LRR class), putative |
| 7.34847 |
Ahg321144 | Kinase-related protein of unknown function (DUF1296) |
| 8.7178 |
Ahg928792 | Metallo-hydrolase/oxidoreductase superfamily protein |
| 9.94987 |
Ahg483191 | glutamate synthase 2 |
| 11.6619 |
Ahg474357 | Coatomer, beta' subunit |
| 12 |
Ahg494201 | binding |
| 12.49 |
Ahg492801 | tripeptidyl peptidase ii |
| 14.0357 |
Ahg486507 | alpha/beta-Hydrolases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|