Detail



ID : Ahg324042

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|324042|fgenesh1_pm.C_scaffold_5001586
Sequence
ATGTCTGCCA AGTGGCGAGC TCTGCAGCAT CGCCATCGTT ACACTTACAG TGCTGTTCTG TTCCCCAGCT CCTTCACTGC TTCTTTGAGC AAATCTAGTT TGTCTCAGTC TTGTCCCAAG TTTTACTCCG ACATTGGGGA ATTGGTTTCT TTGAATTCAA TCTACGCGCA AGTTAATCAC GCCAAGAAAT TTGTTGCTTC GTTCGGAGAG GTTCTCGCCA AGACACATGA AAATGAAGGA GGCGAGAGAG AGGCAGTTTT TGTACGGGAA GCTATTAGGT TTTACTTGGA GGTTCTGTTC ATGGAGAATT CTTTGCCTCT ACATAAGACC CTTGTTTCAG CCTTGGCTAA AACCAGTAAG TTCCATTCAG TGATTAGTTC GTGTTTTAAG GAGCTTTGTG ATGAATACGG CGGTTTGGAA GATGGTGGGA ACCGATTCTG TGTCTCTAGA GTTGCTTTGT CAGTGATGGG TATGCCAAAA TTGGGATATT TGGTTGATAT AATTGAAGAT TGCGCGCTTT TGGTTGGTCA TGATATCGTT TCAGGGTTGA ATGGTATAAT CTTAGACACT GAAGCTTGTG ATAGGCCTCC TCCTACTGTT ATGGAGCAAT GCCAAGAGGC TTTGTCTTGC TCGTATTACT TGTTTCAGCG GTTTCCTTTG AAGTTTAAGG GTTTAGTTGG GGAGGATGCA TGTTTTATGG AGAGTGTTTT GGCTGTTCAA GTAAGCATTT TGAAGTCGCC GGCATTTTCT AGAGACTGCT ATGTGGCTGC TGGTGTGAGT TTCTGTGCTG CTCTACAGGT CTGTCTCAAA GACGAAGAGC TTGGATTGTT TATAGCGCAA GGTATATTTT GCTGGAGTAG TGTCGTTAGG TTGACTGATA TTATTAGCAA AATTCCATTT GCCGGGGACA TTTGTTCTGA GATCTGCAGT TTTTCATCTT TGAGTAGACT CTGCTTGATC CGAGGCATTC TTACTACAGT TTCGAGGGGT ATTCTTGTTT CTTCTTTTGC TCGGTTGAGT AACAGTGATT GTGATCACAA AACTATTCTG TATGACGGAA TTTTGCTCGA ACTTTGTGAT TTATGCGAGA ACCCCATTGA CAGCCATTTA AATTTTCACG CACTGACTGT GATGCAGATT TGCATGCAAC AGATCAAGAC ATCTATGTTA ACTGATTTAT CAGAAGATTA TGATCCAATG CCAGACAGCA TGGCCGCTCG AGTACTCAGA ATTATATGGA ACAACTTGGA GGACCCTTTG AGCCAGACAG TCAAACAAGT TCATCTCATG TTTGACCTCT TACTAGACAT TCAAACCACA GTCCACCAGA CAGATGATAA AGTGGGAATA AGGGAATCTT TGCTTAAAAT TGTCAACTAT CTTCTTCGTT TAGGATCACG CTGTAAGGGA AGATACGTTC CATTAGCATC CTTGACTAGA CGGTTAGGTG CTAAGACTTT GATGGATATG AGCCCTAACC TATTGTTCGA GATGGCAAAT GCATATATTG ATGATGATGT CTGCTATGCT GTAACGTCAT TTATAAAATG TTTCCTTGAA ATGTTGCGTG ATGAAAGCTG GGGGAGCGAA GGTGTTGACC AGGGTTATGC GCGTTATCGA GAACATTGTT TGCCTCCTTT CCTTTACGGG CTTGCTTCTG GCATCTCGAA ACTCAGGTCC AATCTAAATA CCTATGCAGT TCAAGTCTTG CTTGAACTGG ATGTAGACAG TATATTTCTT TTGCTTGCGT TTATATCTAT TGGGCCGAGT GAGGAAGAGA CAAAGCTCAA CTATACTGAG TTGAGTAACA TGAGTATGGA ACTGACAGTT GAACAGAAAG TGGTTGTTTT AGTGTCATTA CTGAAAGTTT GTCGTACACT TGCATTCCTT GAAGGGGATA TTGAACAAAA AAGAAGTACG GATGCATTTG CAGTTGTCCA AATTAAGGGT ATTGAGTTAA AAGTTCCCAT TGAGTGGCTA AAAATGGCCT TAACCCATGT TGATGAGTCG GTTCGTGTGG ATGCTGCAGA GACACTCTTC TTAAACCCCA AGACTTCTAG CCTTCCATCC CCCTTAGAGC TTTATCTCAT GAAGGAGGCT GTTCCCTTGA ACATGAGGTC ATCTTCTACA GGTTTTCAAA TGAAATGGAC CAGTTTGTTC AGGAAATTTT TTCTCCGGGT CCGTACGTCG CTGGAAAAGC AGTATAAGCT AGGGAGCTTG CAACCACTTA AAAGCAACAA GAGTGCAGTT CTACGAGCAG AGAGTTTGTT CAAGTTTATG AGGTGGCTGA GTTCCTTTTT GTATTTATCT TGCTACCCTT CTGCCCCTTA CAGGAGAAAG ATAATGGCGA CGGAACTTAT ACTGATCATG ATTGAAGTCT GGCCTGTTGT GGCTTCTAAG GATCCCACTT CGCATCAAGG CCATCTTTAC CCATACTGCG ATATTGTCAC TTCACATGAT TCAACGTTAT TGCTAATTGG ATCAATTGTT GATAGTTGGG ACAGGCTTAG GGAAAATTCT TTCCGTATTT TGCTTCACTT TCCAACTCCA TTTACTGGCA TTTCAAGTGA AGACATGGTC CAAATCATTA TTCCTTGGGC CAAACATCTA GTCTGCAGTC CACGGGTAAG AGAGAGTGAT GCAGAGTGTG AAAGCATAAA TGGTCTTTAT CAGAACGCTA AACCCAAGTA TCCTGTGGTT GAGTATATCA AATCACTTAT TCATTGGCTT GATACTTCTG TGACGGAGGG AGAGCGTGAT CTCTCTGAAG CATGCAAAAA CAGTTTTGTT CATGGGGTAT TATTAGCTTT GCGTTACACT TTTGAGGAAT TGGACTGGAA CTCTAGTGCA GTGTTAAGTA TATCAGAGAT GAGAAAGGAG CTGGAAAAGC TTCTGAAACT GGTGACGCGA ATAACTACAT TAGCACTTTG GGTGGTTTCT GCAGATGCTC TGTGCTTGTC TGAGGATATG GATGACATAA TAGATGATGA TAGTTTCTTT TCAAATGTTC AAGATGATGC TGCCGCTGTT CTCTCAGAGG AACACACGAG TACACATCCA AAACCTGTGC ATGAAACAGT ACAATCAGAA CAGGTAGTTA TGGTTGGTTG CTGGCTCGCT ATGAAGGAGG TGAGTCTTCT TTTGGGAACC ATTATAAGAA AGATTCCATT ACCTACCAGC AGCCTTAGAC CCTTAGAAAA TGGTGATACA GCTTCTGCAG TCCCCAATGA TTTAGTGATA GGAAATTCTG AATCACTGCT TGACCTGAAG CAACTTGAAA AGATTGGAGA CCACTTCTTG GAAGTGCTTT TAAAAATGAA GCACAATGGT GCAATAGATA AGACAAGAGC TGGATTTACA GCTTTGTGCC ACCGTTTACT ATGTTCTAAC GATCCAAGAC TTTGTAAGTT GACAGAATCC TGGATGGAGC AACTTATGGA AAGAACTGTG GCAAGAGGAC AGACAGTGGA CGATTTGTTA AGAAGAAGTG CAGGAATTCC CGCTGCATTT ATTGCTCTTT TTCTCTCAGA ACCGGAAGGT TCACCAAAGA AGCTTCTCCC ACAGGCGCTT AGGTGGCTAA TAGGTCTTGC AGAGAAGCCT CTCATGGAAC CCCTGGAACA GAAGGTTTCT GAAAATATGG TTGAGGAGAT AAATTCTTCT GATATGCATA CAAGTGAAAA ACATTCAAAG GTCCGTGATG AAGGAGTCGT TCCAACGGTG CATGCCTTCA ATGTTCTCAA AGCTACTTTC AACGACACAA ACTTGAGCAC TGATACTTCT GGGTTTTCCG CGGAGGCTAT GATTGTTTCA ATAAGATCCT TCTCTTCACC ATATTGGGAG GTCAGAAACA GTGCCACACT TGCATACACT GCCTTGGTCC GTAGAATGAT TGGATTCCTC AATGTTCAAA AACGTGGATC TACCCGTCGT GCCTTGACTG GGCTTGAATT TTTTCACAGG TACCCCTTGT TGCACCCTTT TATATACAGT GAACTAAAGG CAGCAACTGA TTTGCTTGAC ACATCTGGTC CATCTGATTC AAACCTCGCA AATCTTGTCC ATCCGAGTTT ATGGCCGATT CTGATTCTTT TATCTAGGCT TAAGCCTTCA CCCATTGCAA GTGAAACTGG AGATGACCTG GACCCGTTCG TTTTCATGCC CTTTATTATG AAATGCTCTA CTCAAAGTAA TCTCCGTGTT CGTGTTTTGG CATCACGTGC TCTAGTAGGT CTTGTTTCCA ATGAGAAACT CCAAAGCGTT CTGCTCCGAA TTGCCTCGAC ATTACCTTCT AATGGGGTGC AAGGTGGGTC CTTCAATTAT CTTCACGGTA TTTTGTTGCA ACTTGGTAAT CTCCTAGATA CAAACTGTAG AGACCTTGTT GATGACTCTA AGAAGGATCA GATTATTGGA AAATTGATCA CTGTCCTTGC AAAATGCTCA TGGTTGGCTT CTCCATTGAC GTGCCCTTGC CCGATCCTCT GTACATCTTT TTTGAGAGTG CTTGATCATA TGCGAGTTAT TGAATGGACA TGCTCTGAAA GCAAAAATCT AAGGGACATC TACAAATTGC ACTTGGATCT ATCAACAAAT TGCTTGGATG CAGATGCTTC TTACGGTTTC TCCTATTATG ACCCTTCAAT CGCTGAGCTT AGAGAACAAG CAGCTGTATC TTATTTTGGT TGCGTATTTC AGCCATCTGA TGAAGCAGCT GAAGTTTTTC AGATTACTCA AAGATCAAAT TTACGATCAC AGAAAGTTCC TGAAGCATTA AGTTTTCCTG ACCTTAACGA GAGGCTCCTT CGTTGTATAT CTGATCAATC ATATGAAGTT CGTCTTGCAA CACTGAAGTG GTTTCTGCGG TTTCTGAAGT CAGAAGATTC CAGTTTCTCA GAGTCGAGCA GTATTTGGAA CTGGGCAAAA AACGGTCTTC AGGTGATATT ATTAGAGCTC TTGGACAAGG AGAAAAACCA TAAATGTGAG AACTACATTC TGAGGATTCT TTTCCAGTGG AATCTTCTTA TGTTCAAAAA ATCATGTAAC GGAGAATCTG TTGAAGGCAT TTACGTTGGT TCGTTGAATT ATGATTCGGT TTTTCATCTT TGGGGCAGGC TGACTTCTCT ATATGAGAAC ACACGACGTG CTAAAATCCG AGGTACACTC ATGTGTTGCC TGGCAATTTG TGTGAAGCAT CTCACGTGTT TGTTCATCCA CAAAAACGAA TCTGAAAAGG AAGAGGAACC AAGATGGGGT TGTATAACTG ATTGTGTCTC CTACTTTGTT AACTTGATCA AACAGAAAAG CTTACCATCC GAGCAAGTAA ATGTTCGCCA TGCATCTGCA GAGGCTATTA TAGCATCCGG TATACTGGAA CAAGCGAAGC TCATAGGTCC TCTTGTCTCA AATCACCAAA TTTTCTCTGA AACTACACCA AGCAAATTTC AAAAAGCTTG TGATGTATAC ACATATCAAA TTCTGGAGAT GTGGTTCACT TGCGTCAAAT TGTTGGAGGA CGAAGATGAT CTCATCAGGT CAAAACTTGC TACGGATGTT CAGAAGTGTT TCTTCACTGC CATGGGAGTT CCTACTCAAG TAGATAAAGT CTTGGAAGTG AGCTTCAACC ATTTATCTTC CGTCTTTGGA CACTGGAACG AGTATTCCCA ATATCTCTCG AGATGGGTCT TCAACACCGC AGATTACACA TCCCCACCAA AGGGAGGTGA TCTAGTGAGA CGGGTTTTTG ACAAGGAAAT CGATAATCAC CATGAAGAAA AGCTTATGAT CTTGCAGTTT TGCTGTTACC ATCTACAGAA ACTACCAAAC AGAGACTTTT CCCTGGCACA ACTACTCGAC TGGAGGAGTA AATTCCACAA TCAGTTGCTT TCTTTCGCTA AAGATCATGT CAGTAAACAA AGAGAAAGCT GGGTAGGCGG TGTTGGGAAT CACAAGGATG TTTTTTTGCC ACTCTATGGT AATCTCCTTG GTCTCTACGT CTTCTCCAAC TGCATTTTCA GATTCTCAAC TGATAGCAAT GACAAGAAAA CTCTGTTTTC TGATATGGTT GAACTTGGGG AGGCCCTGAA ACCCTTTTTG AGGAACCCTC TGGTGTCTAA CATGTTCCGA GTAGTTGTCA GATTACATGA GAAGTTTCTG GATGATCCTT TGGTGGACTT ATCTACTGTT CTTTCTGGAG AGATTTGGGA AGCGGAGCCT GCTCTCCTCC GCGTCGCTAA GGTCACTGGT GGTGCTCCTA ACAAGCTCTC TAAGATGTAT GTTCTCTCAA TTCTCTATTA CGGAAACATT AGATGTATTG CTTATTTCTT ACTGATGTTG CATTTGGGAT TCTGGGTTTT CAATATTTCA AGCTGCTTGA AATTGGGGAT TCAGTAG 
Length6387
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16390055.. 16396934
Download Sequence
A.thaliana
AGI-codeAT3G55160.1
Description
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
1.41421 Ahg898458 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
3.4641 Ahg497488 eukaryotic translation initiation factor 2
4.58258 Ahg325456 Calcium-binding EF hand family protein
8 Ahg928421
8.12404 Ahg487159 Pentatricopeptide repeat (PPR) superfamily protein
9.16515 Ahg475255 Tetratricopeptide repeat (TPR)-like superfamily protein
9.79796 Ahg495104 Pentatricopeptide repeat (PPR-like) superfamily protein
10.8167 Ahg489803 cytosolic invertase 2
11.5758 Ahg480928 STRUBBELIG-receptor family 1
13.4907 Ahg490741 Tetratricopeptide repeat (TPR)-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression