| Annotation |
|---|
| Description | jgi|Araly1|326041|fgenesh1_pm.C_scaffold_6001261 |
| Sequence |
ATGTCTGAAC GTCGTGCTAA GCGCCCTAAA ATATCCAGAG GGGGAGATGA CTTTTTGCCT GGGAATATAA TCGAAATCGA GCTTCATAAC TTCATGACAT TTAATCATTT GGTATGCAAA CCTGGATCAC GTTTGAACCT TGTAATTGGA CCTAACGGAT CAGGTAAGAG TTCTCTTGTG TGTGCCATTG CTCTTTGTCT TGGTGGTGAG CCTCAGCTTC TTGGGAGAGC TACCAGTGTT GGAGCTTATG TCAAGCGCGG GGAAGATTCT GGCTACGTTA AGATCTCTCT CAGAGGGAAC ACGAGGGAAG AAAATCTTAC GATTTTCCGT AAGATCGATA CACGTAACAA GTCTGAGTGG ATGTTCAATG GAAGCACAGT TTGTAAGAAA GATATCGTTG AGATTATACA GAAATTTAAC ATTCAAGTTA ACAATCTCAC GCAGTTCCTG CCACAAGATA GGGTTTGCGA GTTTGCCAAG TTAACGCCTG TGCAGCTCCT GGAGGAGACG GAAAAAGCTG TTGGTGATCC TCAGCTGCCA GTCCATCATC GCGCGCTAGT TGACAAAAGC CGTGATCTGA AGCAGCTTGA GAGAGCCGTG GCGAAAAATG GAGAGACGCT GAATCAGCTT AAAGCTCTTG TTGATGAGCA AGAGAAGGAC GTGGAGCGTG TTAGGCAGAG AGAGTTGTTT TTGACTAAGG TTGATTCCAT GAAGAAGAAA TTGCCATGGC TAAAGTATGA TATGAAAAAG GCTGAGTACA TGGATGCTAA GAAGAGAATG AAGGAAGCCC AGAAAAAATT GGATGACGCT GCAGGGATTT TGAACAGCAT GAAGGAACCT ATTGAAAAAC AAAAGAAGGA GAAAGCAGAG ACAGATTCAA AATGCAAAAA AGTTAAGAAT CTCATGGATG CAAATGGAAG AAACCGTTGT AACTTGCTTG AGAAAGAAGA TGAGGCAGAA GCACGTGTAG TGGCAACATA CAAAGAACTG GAGGAATTGA AGAAACAAGA AGAACATCGC CAAGAAAGGA TTCTGAAAGC TACTGAGGAT CTGGTTGCTG CGGAACAAGA ACTCAAAAAC CTGCCTGTAT ACGAACGTCC TGTAGCCAAA CTTGAAGAAT TGAGCTATCA GATTACAGAG CTGCATCAGA GCATAAACCG AAAGAAGAAT CAGAAGGGGG ATAATGAGAG GCTTTTGTCT CAGAAGAGAC ACACCCTGAG GCAATGCGCA GACAAGTTGA AGGACATGGA GAATGCAAAT AACAAACTCT TGAATGCGTT ACGTAACTCT GGAGCTGATA GGATATTTGA CGCATATCAA TGGGTGCAAC AGAATCGTCA TGAGTTTAAA AGGGAAGTAT ATGGTCCTGT TTTGGTAGAG GTTAACGTTC CAAATCGAGA GAACGCTTGC TTTTTGGAGG GTCATGTTCC TTATTATGCC TGGAAGTCTT TTGTCACTCA GGATCCTGAG GACCGTGATT TGCTGGTTAG AAATCTAAAA CGATTTGATG TTCCTGTTCT TAACTATGTC AGCGCTGGCG GCAGTCAAAA GGCCCCCTTT CATATTTCTG ATCAGATGCG GTCTCTTGGG ATCCATACTC GGCTTGATCA AATATTTGAT GCTCCTGACG CCATCAAGGA GGTCTTAGCT TCCCAGTTTG GTCTGGACGA CTCGTACATT GGATCGAAGA TTACCGATCA GAGGGCTGAA GAAGTCTCTA AGTTGGGTAT TACAGATTTT TGGACACCAG ACAATCACTA CCGGTGGTCT TCCTCAAGGT ATGGTGGTCA TTCGTCTGCA AGTGTAGACT CTGTATATCA ATCACGTCTT CTATTATGTG GGGTGGACGT TGGAGAGCTT GAGAAACTGA GATCAAGAAA GGAGGAATTA GAAGACTCTA TTTCATTCAT GGAGGAAACT CACAAGAGTC TTCAAACAGA GCAAAGACTC TTGGAAGAAG AAGCAGCTAA ACTTCATAAA GAGAGGGAGG AGATTGTAAA TGTTTCGCAT CTGGAGAAGA AAAAACGCCG TGAGTTGGAA TCCCGTTACC AGCAAAGGAA GACTAAGCTA GAATCTTTGG AGCAAGAGGA GGACATGGAT GCTTCAGTTG CTAAGCTGAT TGATCAGGCT TCCAGAGCTA ACGCTGACCG CTATACATAT GCGATTAATC TCAAGAAATT GCTTGTGGAG GCTGTTGCTC ATAAGTGGAG TTACGCCGAG AAGCATATGG CTTCTATTGA ATTGGAAAGA AAGATCAGAG AGTCGGAATT CAATATCAAA CAATATGAGA AAACGGCACA ACAGCTATCT CTCGCCGTTG AGTATTGTAA GAAAGAGGTA GAAGGAAAGC AGCAGCGGCT AGCCTCTGCC AAGAGGGATG CAGAATCTGT TGCAATCATC ACACCTGAAC TTAAAAAGGA GTTTATGGAG ATGCCTACCA CAGTCGAAGA ATTGGAAGCG GCTATACAAG ACAATCTGTC TCAAGCCAAT TCAATCCTTT TCGTAAACGA GAACATTCTG CAAGAGTATG AACATCGCCA AAGTCAGATA TATACCATTT CGACGAAGCT CGAAGCTGAT AAAATAGATC TGAGCATATG CATGAAAGAA ATCGATTCGC TAAAGGAGAA ATGGCTTCCA ACATTGAGAC AGCTTGTTGG TCAGATAAAT GAAACATTCA GCCACAACTT CCAAGAAATG GCTGTTGCAG GAGAAGTTTC ATTGGATGAG CGTGACACTG ACTTTGATCA ATACGGAATA CATATCAAAG TGAAATTCAG GGAATCTGGG CAACTTCAGG TTCTAAGCTC TCACCACCAA TCCGGAGGAG AGCGTTCTGT CTCAACTATC CTTTACCTCG TCTCTCTTCA AGATCTGACA AACTGTCCTT TCAGGGTTGT TGATGAGATT AATCAAGGTA TGGATCCCAT AAACGAAAGG AAGATGTTTC AACAATTGGT TAGAGCTGCT AGTCAACCAA ACACACCACA GTGCTTCTTA CTGACACCAA AGCTCCTGCC GGATCTAGAA TACAGTGAAG CCTGTAGCAT TCTGAACATC ATGAACGGTC CTTGGATCGA GCAGCCTTCA AAAGTATGGA GCCTTGGTGA TAGTTGGGGC AATCTCATGA GACGAACCGA AGCTAGTCAA TGTTCTTAA |
| Length | 3159 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6217667.. 6221010 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G15920.1 |
| Description | structural maintenance of chromosomes 5 |
| TAIR curator summary | Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. |
| Alias | [EMB2782][SMC5][EMBRYO DEFECTIVE 2782][structural maintenance of chromosomes 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg483334 | vascular plant one zinc finger protein 2 |
| 9.94987 |
Ahg496587 | chromatin remodeling 24 |
| 10.3923 |
Ahg481427 | ATP-dependent protease La (LON) domain protein |
| 10.4881 |
Ahg490392 | Transducin family protein / WD-40 repeat family protein |
| 12 |
Ahg496305 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 12.1655 |
Ahg907410 | SWIM zinc finger family protein |
| 12.6491 |
Ahg472327 | ARID/BRIGHT DNA-binding domain-containing protein |
| 14.1421 |
Ahg495765 | histone acetyltransferase of the GNAT family 2 |
| 17.3205 |
Ahg471723 | CASC3/Barentsz eIF4AIII binding |
| 21.2132 |
Ahg948460 | decapping 5-like |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|